C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ras responsive element binding protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000039087 Rreb1 10090 + 13:37778400-37952002 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000037232 Rreb1-201 37888871-37951994 protein_coding
  ENSMUST00000110237 Rreb1-002 37827393-37932693 protein_coding
  ENSMUST00000110238 Rreb1-001 37826039-37935545 protein_coding
  ENSMUST00000122842 Rreb1-009 37778400-37893849 protein_coding
  ENSMUST00000124268 Rreb1-004 37888434-37952002 nonsense_mediated_decay
  ENSMUST00000124373 Rreb1-006 37826932-37947024 nonsense_mediated_decay
  ENSMUST00000128570 Rreb1-005 37826315-37952000 protein_coding
  ENSMUST00000138043 Rreb1-007 37825975-37893826 protein_coding
  ENSMUST00000138110 Rreb1-008 37857934-37893914 protein_coding
  ENSMUST00000149745 Rreb1-003 37826932-37932691 protein_coding
  ENSMUST00000162849 Rreb1-010 37947016-37949206 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000037232ENSMUST00000110238ENSMUST00000124268ENSMUST00000128570ENSMUST00000149745ENSMUST00000162849
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000037232 3.831±1.18 3.223±1.08 N/A 0.706±0.51 1.976±0.95 3.598±1.06 2.769±0.47 2.299±0.14 1.660±0.57 3.723±1.91 1.786±0.94 3.225±1.30 4.779±1.16 0.892±0.00
ENSMUST00000110238 N/A N/A N/A N/A N/A N/A 0.624±0.00 N/A 0.776±0.00 N/A N/A N/A N/A N/A
ENSMUST00000124268 N/A N/A N/A 0.270±0.00 N/A 2.404±0.00 N/A N/A 0.645±0.17 N/A N/A 1.959±0.82 N/A N/A
ENSMUST00000128570 1.636±0.00 N/A 5.347±0.81 0.435±0.20 1.235±0.04 3.914±0.00 N/A 1.036±0.00 2.153±0.97 4.824±0.00 2.696±1.40 1.867±0.00 6.462±1.66 N/A
ENSMUST00000149745 N/A 3.953±0.65 N/A N/A 3.508±0.35 3.615±0.31 N/A N/A N/A N/A N/A 3.748±0.79 N/A 0.575±0.04
ENSMUST00000162849 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.591±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003S8 CIL_0003S8_0002 CGP 13:37345345-37952002
CIL_000817 CIL_000817_0002 VISTA 13:37577817-38179534
CIL_0003S7 CIL_0003S7_0002 CGP 13:37778400-37994190

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0005730 IEA nucleolus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000042652 rreb1b ras responsive element binding protein 1b protein_coding Danio_rerio
ENSDARG00000063701 rreb1a ras responsive element binding protein 1a protein_coding Danio_rerio
ENSG00000124782 RREB1 ras responsive element binding protein 1 protein_coding Homo_sapiens

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