C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: CDK5 regulatory subunit associated protein 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000039298 Cdk5rap2 10090 - 4:70216856-70410443 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000076541 Cdk5rap2-003 70223023-70410418 nonsense_mediated_decay
  ENSMUST00000124251 Cdk5rap2-004 70242471-70243852 processed_transcript
  ENSMUST00000126416 Cdk5rap2-005 70398886-70403541 processed_transcript
  ENSMUST00000138561 Cdk5rap2-006 70238350-70264680 protein_coding
  ENSMUST00000140108 Cdk5rap2-002 70249009-70254736 protein_coding
  ENSMUST00000144099 Cdk5rap2-001 70216856-70410443 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000076541ENSMUST00000138561ENSMUST00000140108ENSMUST00000144099
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000076541 1.153±0.41 4.832±1.08 1.028±0.21 1.578±0.00 1.076±0.18 1.083±0.10 0.527±0.18 0.976±0.08 1.052±0.83 0.828±0.15 0.501±0.08 5.147±2.09 3.028±1.91 30.858±14.34
ENSMUST00000138561 N/A N/A N/A N/A N/A N/A N/A N/A 0.776±0.12 N/A N/A N/A N/A N/A
ENSMUST00000140108 N/A N/A N/A 55.000±0.00 N/A N/A N/A N/A 24.483±0.00 N/A N/A N/A N/A N/A
ENSMUST00000144099 0.835±0.39 1.785±0.29 0.935±0.12 3.895±1.81 0.974±0.25 0.738±0.13 0.426±0.10 0.724±0.08 0.848±0.63 0.867±0.12 0.341±0.22 3.671±0.32 0.866±0.41 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004FK CIL_0004FK_0002 CGP 4:68761514-70410443
CIL_0004FL CIL_0004FL_0002 CGP 4:70216856-70534995

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000132 IMP establishment of mitotic spindle orientation
GO:0000226 IEA microtubule cytoskeleton organization
GO:0000242 ISS pericentriolar material
GO:0000922 ISS spindle pole
GO:0001578 ISS microtubule bundle formation
GO:0005515 IPI protein binding
GO:0005516 IEA calmodulin binding
GO:0005737 IEA cytoplasm
GO:0005794 ISS Golgi apparatus
GO:0005813 IDA centrosome
GO:0005874 ISS microtubule
GO:0007059 ISS chromosome segregation
GO:0007420 IMP brain development
GO:0008017 IEA microtubule binding
GO:0015631 IEA tubulin binding
GO:0019901 ISS protein kinase binding
GO:0022008 IMP neurogenesis
GO:0030054 IEA cell junction
GO:0032403 IEA protein complex binding
GO:0044212 ISS transcription regulatory region DNA binding
GO:0045665 IMP negative regulation of neuron differentiation
GO:0045893 ISS positive regulation of transcription, DNA-templated
GO:0046600 IMP negative regulation of centriole replication
GO:0048471 ISS perinuclear region of cytoplasm
GO:0051297 ISS centrosome organization
GO:0070062 IEA extracellular vesicular exosome
GO:0090231 ISS regulation of spindle checkpoint

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000024219 CDK5RAP2 CDK5 regulatory subunit associated protein 2 protein_coding Danio_rerio
ENSG00000136861 CDK5RAP2 CDK5 regulatory subunit associated protein 2 protein_coding Homo_sapiens

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