C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: sidekick homolog 1 (chicken)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000039683 Sdk1 10090 + 5:141241490-142215586 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000074546 Sdk1-002 141856787-142213194 protein_coding
  ENSMUST00000085774 Sdk1-001 141241490-142215586 protein_coding
  ENSMUST00000129831 Sdk1-004 141241918-141582504 retained_intron
  ENSMUST00000145908 Sdk1-003 141373654-141955329 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000074546ENSMUST00000085774ENSMUST00000145908
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000074546 2.078±0.44 2.681±0.29 0.755±0.26 0.749±0.35 1.148±0.56 1.930±0.42 0.115±0.04 0.184±0.07 0.140±0.05 0.619±0.13 0.075±0.03 1.857±1.02 1.113±0.99 1.337±0.51
ENSMUST00000085774 0.566±0.31 1.064±0.22 0.588±0.40 0.716±0.21 0.801±0.06 0.963±0.15 0.053±0.01 0.118±0.02 0.070±0.02 0.215±0.07 0.054±0.02 1.135±0.35 0.210±0.15 0.167±0.02
ENSMUST00000145908 N/A N/A N/A N/A N/A N/A 0.256±0.00 0.402±0.02 N/A N/A N/A 1.861±0.00 N/A 1.033±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002M9 CIL_0002M9_0002 CGP 5:140872999-142215586
CIL_0002MA CIL_0002MA_0002 CGP 5:141241490-142462014

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0007155 IEA cell adhesion
GO:0016021 IEA integral component of membrane
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000062854 sdk1b sidekick cell adhesion molecule 1b protein_coding Danio_rerio
ENSDARG00000078866 sdk1a sidekick cell adhesion molecule 1a protein_coding Danio_rerio
ENSG00000146555 SDK1 sidekick cell adhesion molecule 1 protein_coding Homo_sapiens

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