C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: alkB, alkylation repair homolog 4 (E. coli)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000039754 Alkbh4 10090 + 5:136136146-136141615 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000041100 Alkbh4-002 136136154-136141612 protein_coding
  ENSMUST00000100568 Alkbh4-001 136138781-136141615 protein_coding
  ENSMUST00000125923 Alkbh4-004 136136158-136140778 nonsense_mediated_decay
  ENSMUST00000136634 Alkbh4-003 136136146-136140512 protein_coding
  ENSMUST00000143229 Alkbh4-005 136136202-136140503 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000041100ENSMUST00000100568ENSMUST00000125923ENSMUST00000136634ENSMUST00000143229
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000041100 2.739±1.24 1.914±0.53 3.931±0.21 5.331±2.18 4.005±3.55 2.276±0.93 1.579±0.59 2.364±0.77 4.313±2.30 3.555±0.38 1.578±0.35 3.594±2.27 5.953±1.26 5.837±3.90
ENSMUST00000100568 N/A 5.660±0.00 N/A N/A 4.166±1.78 1.853±0.00 N/A 2.263±0.87 N/A N/A N/A 2.309±1.26 N/A N/A
ENSMUST00000125923 N/A 2.961±0.18 N/A N/A N/A 2.303±0.08 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000136634 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.857±0.00 N/A N/A N/A
ENSMUST00000143229 N/A N/A N/A 2.959±0.00 N/A N/A N/A N/A N/A N/A 0.834±0.00 N/A 8.881±0.00 2.152±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003779 ISS actin binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006482 ISS protein demethylation
GO:0030496 ISS midbody
GO:0031032 ISS actomyosin structure organization
GO:0036090 ISS cleavage furrow ingression
GO:0046872 IEA metal ion binding
GO:0055114 IEA oxidation-reduction process
GO:0070938 ISS contractile ring

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000052247 alkbh4 alkB, alkylation repair homolog 4 (E. coli) protein_coding Danio_rerio
ENSG00000160993 ALKBH4 alkB, alkylation repair homolog 4 (E. coli) protein_coding Homo_sapiens

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