C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: coiled-coil domain containing 40
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000039963 Ccdc40 10090 + 11:119228572-119265236 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000035935 Ccdc40-001 119228572-119265212 protein_coding
  ENSMUST00000053440 Ccdc40-002 119229129-119262900 protein_coding
  ENSMUST00000125724 Ccdc40-007 119262872-119264306 retained_intron
  ENSMUST00000126652 Ccdc40-003 119258927-119265236 processed_transcript
  ENSMUST00000133788 Ccdc40-005 119253553-119264436 retained_intron
  ENSMUST00000143066 Ccdc40-004 119238718-119251809 retained_intron
  ENSMUST00000147037 Ccdc40-011 119228605-119231644 processed_transcript
  ENSMUST00000150358 Ccdc40-010 119228599-119231728 processed_transcript
  ENSMUST00000155683 Ccdc40-006 119259766-119263120 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000035935ENSMUST00000053440ENSMUST00000125724ENSMUST00000126652ENSMUST00000133788ENSMUST00000143066ENSMUST00000147037ENSMUST00000150358ENSMUST00000155683
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000035935 0.016±0.01 0.062±0.04 N/A 1.235±0.10 0.011±0.00 N/A N/A 0.033±0.01 0.022±0.00 N/A 0.014±0.00 N/A 0.028±0.00 N/A
ENSMUST00000053440 N/A 0.038±0.00 0.029±0.00 0.842±0.28 0.022±0.01 0.028±0.00 0.092±0.06 0.030±0.00 0.011±0.00 0.548±0.00 0.013±0.00 4.419±4.04 0.206±0.14 28.267±31.32
ENSMUST00000125724 N/A 0.963±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000126652 0.016±0.00 0.111±0.06 0.163±0.06 1.898±0.12 0.094±0.06 0.206±0.09 0.096±0.06 0.050±0.04 0.168±0.15 1.551±0.43 0.035±0.02 3.490±1.09 0.514±0.25 16.711±4.86
ENSMUST00000133788 0.144±0.07 0.173±0.00 0.170±0.00 N/A 0.097±0.04 0.138±0.01 0.147±0.00 0.075±0.02 N/A N/A N/A N/A N/A N/A
ENSMUST00000143066 N/A 0.135±0.06 N/A N/A 0.042±0.00 N/A N/A 0.050±0.00 N/A N/A N/A N/A N/A N/A
ENSMUST00000147037 N/A N/A N/A N/A N/A N/A N/A 0.080±0.00 N/A N/A N/A N/A N/A N/A
ENSMUST00000150358 N/A N/A N/A N/A N/A 0.114±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155683 N/A N/A N/A N/A 0.486±0.00 0.504±0.00 N/A N/A N/A N/A 0.261±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000040 CIL_000040_0002 CGP 11:119143045-119265236
CIL_00003V CIL_00003V_0002 CGP 11:119228572-119285454

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001947 IEA heart looping
GO:0003341 IMP cilium movement
GO:0003351 IEA epithelial cilium movement
GO:0003356 IEA regulation of cilium beat frequency
GO:0003674 ND molecular_function
GO:0005737 IDA cytoplasm
GO:0005929 IDA cilium
GO:0030324 IMP lung development
GO:0035469 IEA determination of pancreatic left/right asymmetry
GO:0060287 IMP epithelial cilium movement involved in determination of left/right asymmetry
GO:0070286 ISS axonemal dynein complex assembly
GO:0071907 IEA determination of digestive tract left/right asymmetry
GO:0071910 IEA determination of liver left/right asymmetry

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000016813 ccdc40 coiled-coil domain containing 40 protein_coding Danio_rerio
ENSG00000141519 CCDC40 coiled-coil domain containing 40 protein_coding Homo_sapiens

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