C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: nucleoporin 43
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000040034 Nup43 10090 + 10:7667503-7678881 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000040135 Nup43-001 7667503-7678881 protein_coding
  ENSMUST00000161060 Nup43-004 7670755-7675254 retained_intron
  ENSMUST00000162346 Nup43-003 7667514-7668291 retained_intron
  ENSMUST00000162527 Nup43-002 7667540-7676080 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000040135ENSMUST00000161060ENSMUST00000162346ENSMUST00000162527
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000040135 4.056±1.38 1.949±0.88 4.679±0.73 6.801±4.67 3.057±1.85 2.823±0.94 1.780±0.56 3.724±0.59 9.562±9.58 2.479±0.39 2.372±0.21 5.532±1.87 11.619±7.57 12.428±3.85
ENSMUST00000161060 N/A N/A N/A N/A N/A 0.919±0.00 0.467±0.00 N/A 0.607±0.00 0.650±0.00 N/A N/A N/A N/A
ENSMUST00000162346 N/A N/A N/A 2.949±0.00 N/A N/A N/A N/A N/A N/A N/A 7.977±0.00 13.070±8.41 28.019±0.00
ENSMUST00000162527 N/A 0.227±0.04 N/A N/A N/A N/A N/A N/A 0.171±0.02 N/A N/A 1.086±0.00 0.154±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005X2 CIL_0005X2_0002 CGP 10:7589800-7681136
CIL_00050T CIL_00050T_0002 CGP 10:7629373-7681136

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000776 IEA kinetochore
GO:0003674 ND molecular_function
GO:0007059 IEA chromosome segregation
GO:0007067 IEA mitotic nuclear division
GO:0015031 IEA protein transport
GO:0031080 ISS nuclear pore outer ring
GO:0051028 IEA mRNA transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000043884 nup43 nucleoporin 43 protein_coding Danio_rerio
ENSG00000120253 NUP43 nucleoporin 43kDa protein_coding Homo_sapiens

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