C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: alkB, alkylation repair homolog 3 (E. coli)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000040174 Alkbh3 10090 - 2:93980550-94010807 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000040005 Alkbh3-201 93980637-94010730 protein_coding
  ENSMUST00000111240 Alkbh3-001 93980550-94010807 protein_coding
  ENSMUST00000125473 Alkbh3-008 93980550-93984820 processed_transcript
  ENSMUST00000126255 Alkbh3-009 93980550-93984851 processed_transcript
  ENSMUST00000126378 Alkbh3-002 93996247-94010754 protein_coding
  ENSMUST00000127231 Alkbh3-007 93996247-94005187 processed_transcript
  ENSMUST00000130289 Alkbh3-005 94008037-94010752 processed_transcript
  ENSMUST00000130403 Alkbh3-010 93980629-93981626 processed_transcript
  ENSMUST00000138046 Alkbh3-006 93996178-94010431 processed_transcript
  ENSMUST00000138107 Alkbh3-003 94005774-94010754 processed_transcript
  ENSMUST00000156763 Alkbh3-004 94006244-94010752 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000040005ENSMUST00000111240ENSMUST00000126255ENSMUST00000130403ENSMUST00000138046
Transcript ID Adipose Adrenal Bladder Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000040005 16.946±4.99 12.123±2.69 16.071±2.09 6.789±2.79 10.613±2.46 14.061±1.07 13.386±1.57 9.190±3.11 9.471±0.10 13.312±1.66 10.579±2.40 12.252±1.41 20.878±4.82
ENSMUST00000111240 N/A N/A N/A N/A N/A 4.212±0.00 4.365±1.19 2.748±0.40 N/A N/A N/A 3.346±0.00 7.989±0.00
ENSMUST00000126255 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.956±0.00
ENSMUST00000130403 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 28.871±3.83 N/A 57.462±10.53
ENSMUST00000138046 N/A N/A N/A 3.786±0.00 N/A N/A N/A N/A N/A N/A 6.228±0.00 7.449±0.40 N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006281 ISS DNA repair
GO:0006307 ISS DNA dealkylation involved in DNA repair
GO:0008198 ISS ferrous iron binding
GO:0008283 ISS cell proliferation
GO:0016706 IDA oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
GO:0035552 ISS oxidative single-stranded DNA demethylation
GO:0043734 ISS DNA-N1-methyladenine dioxygenase activity
GO:0051747 IDA cytosine C-5 DNA demethylase activity
GO:0055114 IDA:IEA oxidation-reduction process
GO:0080111 IDA DNA demethylation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000045606 alkbh3 alkB, alkylation repair homolog 3 (E. coli) protein_coding Danio_rerio
ENSG00000166199 ALKBH3 alkB, alkylation repair homolog 3 (E. coli) protein_coding Homo_sapiens

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