C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: nucleoporin 88
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000040667 Nup88 10090 - 11:70943058-70969973 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000035283 Nup88-003 70943082-70969962 protein_coding
  ENSMUST00000108530 Nup88-002 70943102-70969954 protein_coding
  ENSMUST00000108531 Nup88-001 70943072-70969973 protein_coding
  ENSMUST00000123192 Nup88-006 70943077-70946362 retained_intron
  ENSMUST00000123917 Nup88-010 70944413-70945034 retained_intron
  ENSMUST00000128193 Nup88-012 70943938-70944488 retained_intron
  ENSMUST00000129615 Nup88-005 70944683-70948815 retained_intron
  ENSMUST00000133188 Nup88-011 70943980-70944737 retained_intron
  ENSMUST00000138634 Nup88-007 70949565-70969961 retained_intron
  ENSMUST00000141179 Nup88-009 70943879-70945100 retained_intron
  ENSMUST00000145336 Nup88-008 70956200-70961791 retained_intron
  ENSMUST00000148168 Nup88-004 70943058-70969959 retained_intron
  ENSMUST00000178253 Nup88-014 70943176-70969880 nonsense_mediated_decay
  ENSMUST00000178369 Nup88-015 70954461-70956462 retained_intron
  ENSMUST00000180225 Nup88-013 70955159-70956913 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000035283ENSMUST00000108530ENSMUST00000108531ENSMUST00000138634
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000035283 N/A N/A N/A N/A 7.831±2.60 3.745±0.12 N/A 3.597±0.08 3.345±1.01 N/A N/A 6.693±2.23 N/A N/A
ENSMUST00000108530 12.400±3.07 26.382±8.26 23.645±2.11 31.626±3.61 12.724±3.36 13.772±2.58 11.642±1.22 10.837±0.63 14.256±8.40 13.717±1.46 10.008±1.82 19.240±7.72 25.265±6.36 35.940±9.43
ENSMUST00000108531 4.934±0.42 N/A 9.665±0.80 16.980±0.00 N/A N/A 2.433±0.00 2.499±0.00 7.224±3.27 5.304±0.74 4.433±0.30 7.040±0.75 7.411±0.80 N/A
ENSMUST00000138634 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.965±0.00 17.120±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00020X CIL_00020X_0002 CGP 11:70790932-70943105
CIL_00060J CIL_00060J_0003 CGP 11:70844778-70969973
CIL_00045W CIL_00045W_0002 CGP 11:70943058-70977833

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0005643 IEA nuclear pore
GO:0015031 IEA protein transport
GO:0051028 IEA mRNA transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000003235 nup88 nucleoporin 88 protein_coding Danio_rerio
ENSG00000108559 NUP88 nucleoporin 88kDa protein_coding Homo_sapiens

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