C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: high mobility group nucleosomal binding domain 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000040681 Hmgn1 10090 - 16:96120618-96127729 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000050884 Hmgn1-001 96120618-96127729 protein_coding
  ENSMUST00000133885 Hmgn1-004 96122376-96127604 protein_coding
  ENSMUST00000142179 Hmgn1-002 96126605-96127466 retained_intron
  ENSMUST00000145713 Hmgn1-003 96122234-96125339 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000050884ENSMUST00000133885
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000050884 27.064±14.21 21.921±13.24 52.787±14.68 45.437±22.62 17.333±4.55 16.419±6.63 7.609±0.74 20.801±3.99 16.548±6.90 34.824±3.08 4.051±0.50 67.280±35.53 103.668±31.56 7.833±2.60
ENSMUST00000133885 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 75.037±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007UB CIL_0007UB_0002 VISTA 16:95547910-96149564
CIL_0004KG CIL_0004KG_0002 CGP 16:95992092-96127729
CIL_0003GM CIL_0003GM_0002 CGP 16:96120618-96157852

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000720 IMP pyrimidine dimer repair by nucleotide-excision repair
GO:0000785 IEA chromatin
GO:0003682 IDA chromatin binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0006283 IMP transcription-coupled nucleotide-excision repair
GO:0006325 IMP chromatin organization
GO:0006357 IMP regulation of transcription from RNA polymerase II promoter
GO:0010224 IMP response to UV-B
GO:0010225 IDA response to UV-C
GO:0031492 IEA nucleosomal DNA binding
GO:0040034 IGI regulation of development, heterochronic
GO:0048597 IMP post-embryonic camera-type eye morphogenesis
GO:0050678 IMP regulation of epithelial cell proliferation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000205581 HMGN1 high mobility group nucleosome binding domain 1 protein_coding Homo_sapiens

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