C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: beta-1,4-N-acetyl-galactosaminyl transferase 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000041372 B4galnt3 10090 - 6:120203073-120294559 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000057283 B4galnt3-001 120203094-120294559 protein_coding
  ENSMUST00000125341 B4galnt3-002 120203073-120242643 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENSMUST00000057283ENSMUST00000125341
Transcript ID Adipose Adrenal Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000057283 N/A 2.578±0.74 0.172±0.00 0.216±0.00 16.549±5.85 N/A N/A 0.159±0.06 0.120±0.10 0.951±0.49 0.565±0.00 0.490±0.00
ENSMUST00000125341 0.026±0.02 1.280±0.00 0.264±0.00 0.161±0.08 10.269±5.40 0.097±0.04 0.554±0.26 0.102±0.03 0.153±0.10 0.746±0.19 0.746±0.29 1.362±0.51

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007TY CIL_0007TY_0002 VISTA 6:119665436-120266145
CIL_0008AW CIL_0008AW_0002 VISTA 6:119874234-120475208
CIL_00083Y CIL_00083Y_0002 VISTA 6:120053928-120655330

Gene Ontology
GO IDEvidence TypeGO Description
GO:0008152 IEA metabolic process
GO:0008376 ISS acetylgalactosaminyltransferase activity
GO:0016021 IEA integral component of membrane
GO:0032580 IEA Golgi cisterna membrane
GO:0033842 IEA N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000058939 b4galnt3b beta-1,4-N-acetyl-galactosaminyl transferase 3b protein_coding Danio_rerio
ENSDARG00000077484 B4GALNT3 (2 of 3) beta-1,4-N-acetyl-galactosaminyl transferase 3 protein_coding Danio_rerio
ENSDARG00000078749 b4galnt3a beta-1,4-N-acetyl-galactosaminyl transferase 3a protein_coding Danio_rerio
ENSG00000139044 B4GALNT3 beta-1,4-N-acetyl-galactosaminyl transferase 3 protein_coding Homo_sapiens

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