C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cDNA sequence BC055324
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000041406 BC055324 10090 - 1:163945993-163994796 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000045876 BC055324-001 163953746-163994796 protein_coding
  ENSMUST00000097493 BC055324-002 163945993-163994796 protein_coding
  ENSMUST00000159617 BC055324-006 163954275-163962023 nonsense_mediated_decay
  ENSMUST00000160926 BC055324-003 163986890-163994764 nonsense_mediated_decay
  ENSMUST00000161321 BC055324-005 163967112-163972319 retained_intron
  ENSMUST00000162949 BC055324-004 163989738-163994541 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000045876ENSMUST00000097493ENSMUST00000159617
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000045876 1.919±0.75 N/A 2.214±0.03 7.415±2.20 1.722±0.47 N/A 0.639±0.03 1.041±0.04 6.864±2.54 1.034±0.00 0.353±0.04 2.453±0.80 5.127±2.06 3.720±1.50
ENSMUST00000097493 N/A 1.156±0.00 N/A N/A 1.097±0.00 1.688±0.31 N/A N/A 3.163±0.37 N/A N/A 1.733±0.38 2.872±0.00 1.519±0.05
ENSMUST00000159617 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.331±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00093H CIL_00093H_0002 VISTA 1:163597221-164199818

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000042120 C20H1orf112 chromosome 1 open reading frame 112 protein_coding Danio_rerio
ENSG00000000460 C1orf112 chromosome 1 open reading frame 112 protein_coding Homo_sapiens

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