C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: DNA segment, Chr 11, Wayne State University 47, expressed
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000041623 D11Wsu47e 10090 + 11:113684412-113694647 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000042227 D11Wsu47e-002 113684412-113694647 protein_coding
  ENSMUST00000106621 D11Wsu47e-001 113684447-113694647 protein_coding
  ENSMUST00000123466 D11Wsu47e-003 113684440-113688213 protein_coding
  ENSMUST00000153732 D11Wsu47e-004 113685086-113688128 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000042227ENSMUST00000106621ENSMUST00000123466ENSMUST00000153732
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000042227 1.036±0.03 1.145±0.46 2.025±0.49 2.822±1.41 1.533±0.23 1.127±0.65 0.437±0.04 1.337±0.65 1.635±0.91 1.328±0.68 0.302±0.15 1.671±0.33 2.934±1.44 21.637±0.00
ENSMUST00000106621 3.064±0.96 N/A 2.081±0.07 5.393±1.01 0.715±0.24 1.109±0.44 0.600±0.31 1.076±0.48 1.720±0.96 0.820±0.24 0.638±0.32 3.263±1.67 3.108±0.96 105.001±6.89
ENSMUST00000123466 N/A N/A N/A 2.160±0.00 N/A N/A N/A N/A N/A N/A N/A 3.498±0.00 N/A N/A
ENSMUST00000153732 N/A N/A N/A 2.488±0.00 N/A N/A N/A N/A N/A N/A N/A 6.358±1.76 4.341±1.69 156.049±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007R4 CIL_0007R4_0002 VISTA 11:113433041-114034346
CIL_00067A CIL_00067A_0002 CGP 11:113661319-113694647
CIL_0008QM CIL_0008QM_0002 VISTA 11:113678008-114283381
CIL_00072C CIL_00072C_0002 CGP 11:113684412-113710017

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000141219 C17orf80 chromosome 17 open reading frame 80 protein_coding Homo_sapiens

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