C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: triggering receptor expressed on myeloid cells 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000041754 Trem3 10090 + 17:48247777-48258841 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000048065 Trem3-201 48247777-48258841 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000048065
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000048065 0.084±0.04 0.022±0.00 0.030±0.01 0.198±0.14 0.075±0.00 0.074±0.01 0.086±0.02 2.300±3.24 0.683±0.18 0.103±0.04 0.057±0.05 0.035±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008XI CIL_0008XI_0002 VISTA 17:47688296-48291797
CIL_0008IB CIL_0008IB_0002 VISTA 17:47708185-48309224
CIL_0007QG CIL_0007QG_0002 VISTA 17:47710565-48311720
CIL_0008F3 CIL_0008F3_0002 VISTA 17:47757242-48358147

Gene Ontology
GO IDEvidence TypeGO Description
GO:0002374 IGI cytokine secretion involved in immune response
GO:0005515 IPI protein binding
GO:0016477 IGI cell migration
GO:0030593 IGI neutrophil chemotaxis
GO:0042107 IGI cytokine metabolic process
GO:0050755 IGI chemokine metabolic process
GO:0070945 IGI neutrophil mediated killing of gram-negative bacterium
GO:0072672 IGI neutrophil extravasation

Homologs

No Homologs available.

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