C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 24 (sodium/potassium/calcium exchanger), member 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000041771 Slc24a4 10090 + 12:102128733-102267091 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000079020 Slc24a4-001 102129174-102266749 protein_coding
  ENSMUST00000159329 Slc24a4-002 102128733-102267091 protein_coding
  ENSMUST00000161325 Slc24a4-003 102129391-102266641 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000079020ENSMUST00000159329ENSMUST00000161325
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000079020 0.116±0.11 0.056±0.00 0.024±0.00 0.129±0.00 N/A 0.087±0.00 0.233±0.14 0.056±0.01 0.063±0.02 5.366±2.34 N/A 0.526±0.13 0.060±0.01 0.016±0.00
ENSMUST00000159329 0.071±0.06 0.158±0.10 0.005±0.00 0.114±0.00 0.038±0.02 0.025±0.02 0.079±0.03 0.031±0.01 N/A 2.173±0.04 0.011±0.00 0.599±0.43 0.028±0.01 0.070±0.03
ENSMUST00000161325 0.077±0.00 0.169±0.05 0.005±0.00 0.227±0.00 0.053±0.03 0.035±0.00 0.312±0.15 0.028±0.00 0.054±0.03 N/A N/A 0.304±0.00 0.064±0.07 0.124±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002N4 CIL_0002N4_0003 CGP 12:101975974-102267091
CIL_000539 CIL_000539_0002 CGP 12:102128733-102390855

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005432 ISA calcium:sodium antiporter activity
GO:0005737 IDA cytoplasm
GO:0005886 IEA plasma membrane
GO:0005887 IC integral component of plasma membrane
GO:0006813 IEA potassium ion transport
GO:0006874 IEA cellular calcium ion homeostasis
GO:0007608 IMP sensory perception of smell
GO:0008273 ISA calcium, potassium:sodium antiporter activity
GO:0015293 IEA symporter activity
GO:0016020 IDA membrane
GO:0035725 ISA sodium ion transmembrane transport
GO:0050896 IEA response to stimulus
GO:0070588 IEA calcium ion transmembrane transport
GO:0097186 IMP amelogenesis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000015425 slc24a4a solute carrier family 24 (sodium/potassium/calcium exchanger), member 4a protein_coding Danio_rerio
ENSDARG00000067509 slc24a4b solute carrier family 24 (sodium/potassium/calcium exchanger), member 4b protein_coding Danio_rerio
ENSG00000140090 SLC24A4 solute carrier family 24 (sodium/potassium/calcium exchanger), member 4 protein_coding Homo_sapiens

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