C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: small G protein signaling modulator 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000042216 Sgsm1 10090 - 5:113243220-113310786 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000048112 Sgsm1-001 113243220-113310786 protein_coding
  ENSMUST00000057209 Sgsm1-004 113243229-113280601 protein_coding
  ENSMUST00000112324 Sgsm1-006 113273952-113280587 protein_coding
  ENSMUST00000112325 Sgsm1-003 113265674-113310739 protein_coding
  ENSMUST00000138266 Sgsm1-008 113279610-113282892 retained_intron
  ENSMUST00000140981 Sgsm1-007 113285546-113310720 retained_intron
  ENSMUST00000145708 Sgsm1-002 113258113-113310777 processed_transcript
  ENSMUST00000147856 Sgsm1-005 113257474-113280601 processed_transcript
  ENSMUST00000154248 Sgsm1-010 113266287-113310697 protein_coding
  ENSMUST00000156340 Sgsm1-009 113275887-113279336 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000048112ENSMUST00000057209ENSMUST00000112324ENSMUST00000145708ENSMUST00000147856ENSMUST00000154248ENSMUST00000156340
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000048112 0.426±0.00 1.835±0.59 N/A 13.471±6.26 0.385±0.17 2.123±0.45 0.109±0.03 0.326±0.04 N/A 0.644±0.19 0.061±0.01 1.031±0.39 0.181±0.02 0.241±0.17
ENSMUST00000057209 0.537±0.25 0.309±0.00 0.767±0.13 2.907±0.00 0.669±0.44 2.371±0.86 0.053±0.02 0.223±0.00 1.220±0.59 0.421±0.15 0.060±0.01 1.430±0.91 1.598±0.59 0.223±0.20
ENSMUST00000112324 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.052±0.00 N/A N/A N/A
ENSMUST00000145708 N/A N/A N/A N/A 0.315±0.00 N/A N/A N/A N/A N/A 0.054±0.00 2.358±0.00 N/A N/A
ENSMUST00000147856 0.210±0.02 N/A N/A N/A N/A N/A 0.053±0.00 N/A N/A N/A 0.024±0.00 N/A 0.681±0.13 0.249±0.07
ENSMUST00000154248 N/A N/A N/A N/A N/A N/A N/A 0.343±0.00 N/A N/A N/A N/A N/A N/A
ENSMUST00000156340 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.117±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00095C CIL_00095C_0002 VISTA 5:112851952-113454228

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005097 IEA Rab GTPase activator activity
GO:0005794 IEA Golgi apparatus
GO:0032851 IEA positive regulation of Rab GTPase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000028857 SGSM1 (1 of 2) small G protein signaling modulator 1 protein_coding Danio_rerio
ENSDARG00000075376 SGSM1 (2 of 2) small G protein signaling modulator 1 protein_coding Danio_rerio
ENSG00000167037 SGSM1 small G protein signaling modulator 1 protein_coding Homo_sapiens

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