C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: homeobox D1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000042448 Hoxd1 10090 + 2:74762980-74765142 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000047793 Hoxd1-001 74762980-74765142 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonKidneyLiverOvaryPlacentaTestisENSMUST00000047793
Transcript ID Adipose Bladder Brain Breast Colon Kidney Liver Ovary Placenta Testis
ENSMUST00000047793 0.019±0.00 0.018±0.01 0.235±0.20 0.017±0.00 0.027±0.01 0.038±0.01 0.015±0.00 0.041±0.02 0.049±0.03 0.018±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007L2 CIL_0007L2_0002 UCNEbase 2:73834549-75665799
CIL_00090A CIL_00090A_0002 VISTA 2:74189927-74791300
CIL_0008JZ CIL_0008JZ_0002 VISTA 2:74350860-74952235
CIL_00017R CIL_00017R_0002 CGP 2:74762980-74878431

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0019233 IMP sensory perception of pain
GO:0030182 IMP neuron differentiation
GO:0043565 IEA sequence-specific DNA binding
GO:0048706 IMP embryonic skeletal system development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000128645 HOXD1 homeobox D1 protein_coding Homo_sapiens

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