C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: synaptopodin
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000043079 Synpo 10090 - 18:60593973-60660142 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000097566 Synpo-001 60593973-60624336 protein_coding
  ENSMUST00000115318 Synpo-005 60600207-60610105 protein_coding
  ENSMUST00000123288 Synpo-011 60604109-60623325 protein_coding
  ENSMUST00000128528 Synpo-006 60593991-60600497 processed_transcript
  ENSMUST00000130044 Synpo-003 60593982-60624573 protein_coding
  ENSMUST00000130360 Synpo-002 60593990-60629853 protein_coding
  ENSMUST00000137894 Synpo-007 60605883-60660142 processed_transcript
  ENSMUST00000139236 Synpo-010 60645658-60648272 processed_transcript
  ENSMUST00000143275 Synpo-008 60600209-60648319 protein_coding
  ENSMUST00000154857 Synpo-009 60629498-60648272 processed_transcript
  ENSMUST00000155195 Synpo-004 60600206-60624236 protein_coding
  ENSMUST00000160395 Synpo-012 60604260-60624262 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000097566ENSMUST00000115318ENSMUST00000128528ENSMUST00000130044ENSMUST00000130360ENSMUST00000143275ENSMUST00000155195
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000097566 2.571±1.16 4.956±2.14 4.774±0.38 N/A 2.827±0.93 3.703±0.00 3.765±0.72 N/A 0.626±0.14 5.430±0.05 N/A 10.900±0.00 1.598±0.49 N/A
ENSMUST00000115318 N/A N/A N/A 6.591±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.289±0.99
ENSMUST00000128528 N/A 11.440±4.58 3.246±0.35 N/A 5.865±0.09 12.470±0.00 N/A N/A 0.373±0.00 15.823±0.00 N/A 37.914±16.80 1.662±0.01 1.215±0.00
ENSMUST00000130044 5.368±1.37 10.886±0.88 1.840±0.44 0.681±0.01 9.731±2.13 13.883±3.18 N/A 18.947±5.04 0.731±0.28 13.070±5.36 N/A 42.726±18.52 3.851±2.63 1.871±0.70
ENSMUST00000130360 N/A 2.018±0.00 N/A 0.219±0.00 2.685±0.79 4.747±0.61 N/A N/A 0.275±0.08 3.402±0.00 N/A 16.729±4.12 0.884±0.10 N/A
ENSMUST00000143275 N/A N/A N/A 0.272±0.01 N/A 2.905±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155195 N/A N/A N/A 19.518±0.00 4.343±1.79 N/A 12.937±1.57 N/A N/A N/A 29.625±7.34 N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001725 IDA stress fiber
GO:0003779 IDA actin binding
GO:0005515 IEA protein binding
GO:0005737 IEA cytoplasm
GO:0005923 IEA tight junction
GO:0015629 IDA actin cytoskeleton
GO:0030425 ISO dendrite
GO:0030865 NAS cortical cytoskeleton organization
GO:0032233 IEA positive regulation of actin filament bundle assembly
GO:0043197 NAS dendritic spine
GO:0045211 IEA postsynaptic membrane
GO:0051492 IDA regulation of stress fiber assembly

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000086156 SYNPO synaptopodin protein_coding Danio_rerio
ENSG00000171992 SYNPO synaptopodin protein_coding Homo_sapiens

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