C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RIKEN cDNA B430306N03 gene
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000043740 B430306N03Rik 10090 + 17:48316141-48327024 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000049614 B430306N03Rik-001 48316141-48327024 protein_coding
  ENSMUST00000124205 B430306N03Rik-005 48316424-48318211 retained_intron
  ENSMUST00000125174 B430306N03Rik-003 48316165-48325525 nonsense_mediated_decay
  ENSMUST00000129825 B430306N03Rik-004 48316409-48324199 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000049614ENSMUST00000124205ENSMUST00000125174ENSMUST00000129825
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000049614 0.315±0.13 0.037±0.01 0.044±0.00 0.008±0.00 0.633±0.22 0.081±0.05 0.060±0.02 0.059±0.00 1.198±0.72 0.375±0.13 0.007±0.00 0.288±0.11 0.084±0.04 1.147±0.27
ENSMUST00000124205 N/A N/A N/A 0.021±0.00 N/A N/A 0.095±0.02 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000125174 0.366±0.25 0.148±0.07 0.178±0.00 0.272±0.32 0.852±0.27 0.177±0.08 0.070±0.01 0.066±0.03 0.942±0.88 0.371±0.05 0.027±0.01 0.543±0.18 0.082±0.05 0.639±0.14
ENSMUST00000129825 N/A N/A N/A N/A N/A N/A N/A 0.137±0.05 N/A N/A 0.153±0.00 0.340±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008F3 CIL_0008F3_0002 VISTA 17:47757242-48358147

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

No Homologs available.

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