C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 25, member 53
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000044348 Slc25a53 10090 - X:136981116-137038302 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000056674 Slc25a53-011 136982894-136993057 protein_coding
  ENSMUST00000113069 Slc25a53-001 136981116-137038300 protein_coding
  ENSMUST00000113070 Slc25a53-201 136981122-137038278 protein_coding
  ENSMUST00000123516 Slc25a53-003 137002783-137038272 processed_transcript
  ENSMUST00000125747 Slc25a53-004 137002782-137038032 processed_transcript
  ENSMUST00000125864 Slc25a53-009 137030002-137038024 processed_transcript
  ENSMUST00000129807 Slc25a53-012 136983036-136993089 protein_coding
  ENSMUST00000132171 Slc25a53-006 137031795-137038302 retained_intron
  ENSMUST00000136300 Slc25a53-010 137003551-137017758 processed_transcript
  ENSMUST00000140615 Slc25a53-008 137032404-137038008 processed_transcript
  ENSMUST00000145842 Slc25a53-002 137001055-137038302 processed_transcript
  ENSMUST00000148253 Slc25a53-007 137015272-137038299 processed_transcript
  ENSMUST00000154484 Slc25a53-005 137001018-137030079 retained_intron
  ENSMUST00000171738 Slc25a53-202 136981122-136993032 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000056674ENSMUST00000113069ENSMUST00000113070ENSMUST00000123516ENSMUST00000125747ENSMUST00000129807ENSMUST00000132171ENSMUST00000136300ENSMUST00000145842ENSMUST00000154484ENSMUST00000171738
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000056674 N/A 0.545±0.08 N/A N/A 2.827±0.46 0.699±0.19 N/A N/A 0.211±0.07 0.998±0.00 N/A 0.620±0.00 N/A 0.928±0.09
ENSMUST00000113069 0.264±0.04 0.200±0.02 N/A N/A 0.647±0.00 0.212±0.05 N/A 0.174±0.04 0.219±0.03 0.674±0.14 N/A 0.331±0.06 N/A 0.213±0.07
ENSMUST00000113070 N/A N/A N/A N/A N/A 0.230±0.00 N/A N/A 0.104±0.00 N/A 0.115±0.00 0.284±0.00 N/A N/A
ENSMUST00000123516 0.695±0.22 N/A N/A N/A 1.599±0.00 0.475±0.00 0.207±0.00 0.275±0.10 0.271±0.08 0.813±0.00 0.249±0.08 1.114±0.35 1.709±1.26 0.467±0.01
ENSMUST00000125747 0.885±0.00 N/A 1.651±0.00 2.393±0.77 1.219±0.41 0.390±0.16 0.357±0.13 N/A 0.578±0.30 0.666±0.00 0.260±0.00 0.754±0.24 1.308±0.87 0.208±0.00
ENSMUST00000129807 N/A N/A N/A N/A N/A 0.513±0.19 N/A 0.343±0.00 0.264±0.00 N/A N/A N/A N/A N/A
ENSMUST00000132171 N/A 0.698±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.105±0.00 N/A N/A
ENSMUST00000136300 N/A N/A N/A N/A N/A N/A 0.792±0.00 N/A N/A N/A N/A 1.853±0.53 N/A N/A
ENSMUST00000145842 0.642±0.38 0.628±0.42 N/A 1.107±0.53 0.439±0.08 0.275±0.18 0.189±0.05 0.215±0.06 0.260±0.10 0.860±0.42 0.129±0.04 1.007±0.66 0.734±0.17 0.166±0.02
ENSMUST00000154484 0.245±0.00 N/A N/A N/A N/A N/A N/A 0.106±0.00 0.145±0.01 N/A 0.038±0.00 0.301±0.10 0.280±0.00 N/A
ENSMUST00000171738 N/A 0.328±0.00 N/A 2.017±1.01 1.490±0.31 0.163±0.02 0.210±0.05 0.130±0.03 0.172±0.08 0.481±0.00 0.148±0.07 0.309±0.00 0.276±0.00 0.625±0.21

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000721 CIL_000721_0002 CGP X:136974022-137038302
CIL_00012D CIL_00012D_0002 CGP X:136981116-137038302

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0006810 IEA transport
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000269743 SLC25A53 solute carrier family 25, member 53 protein_coding Homo_sapiens

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