C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ring finger protein 31
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000047098 Rnf31 10090 + 14:55591708-55603693 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000019443 Rnf31-001 55591708-55603693 protein_coding
  ENSMUST00000126544 Rnf31-003 55592467-55592948 retained_intron
  ENSMUST00000133903 Rnf31-004 55598385-55598950 retained_intron
  ENSMUST00000137296 Rnf31-002 55591744-55597656 nonsense_mediated_decay
  ENSMUST00000140178 Rnf31-005 55592275-55603664 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000019443ENSMUST00000140178
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000019443 7.032±0.99 9.455±2.83 7.977±0.19 5.967±1.17 12.821±2.65 8.445±2.37 4.322±1.16 4.784±0.79 4.690±1.79 10.484±0.87 3.496±0.36 7.183±1.79 10.372±4.79 0.924±0.40
ENSMUST00000140178 6.328±1.03 9.526±2.19 N/A 4.361±1.30 9.765±1.41 10.849±3.00 3.873±0.54 5.990±1.11 4.248±1.24 8.256±0.89 N/A 13.045±1.68 N/A 2.620±0.52

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00031B CIL_00031B_0002 CGP 14:55587441-55603693
CIL_00023F CIL_00023F_0002 CGP 14:55591708-55610030

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000209 ISS protein polyubiquitination
GO:0004842 ISS ubiquitin-protein transferase activity
GO:0005515 IPI protein binding
GO:0005829 IDA cytosol
GO:0008270 IEA zinc ion binding
GO:0009898 IDA cytoplasmic side of plasma membrane
GO:0016567 IMP protein ubiquitination
GO:0016874 IEA ligase activity
GO:0023035 IMP CD40 signaling pathway
GO:0035631 IDA CD40 receptor complex
GO:0043123 ISS positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0043130 ISS ubiquitin binding
GO:0050852 ISS T cell receptor signaling pathway
GO:0051092 ISS positive regulation of NF-kappaB transcription factor activity
GO:0060546 IGI negative regulation of necroptotic process
GO:0071797 ISS LUBAC complex
GO:0097039 ISS protein linear polyubiquitination

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000089229 RNF31 protein_coding Danio_rerio
ENSDARG00000090770 CU693487.1 Uncharacterized protein protein_coding Danio_rerio
ENSG00000092098 RNF31 ring finger protein 31 protein_coding Homo_sapiens
ENSG00000259529 IRF9 interferon regulatory factor 9 protein_coding Homo_sapiens

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