C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: trans-acting transcription factor 8
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000048562 Sp8 10090 + 12:118846329-118852578 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000063918 Sp8-201 118846329-118852578 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainLiverPlacentaTestisENSMUST00000063918
Transcript ID Bladder Brain Liver Placenta Testis
ENSMUST00000063918 0.020±0.01 1.245±0.83 0.011±0.01 0.021±0.01 0.002±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007T9 CIL_0007T9_0002 VISTA 12:118347247-118948361
CIL_0008JT CIL_0008JT_0002 VISTA 12:118350488-118951732
CIL_0008EN CIL_0008EN_0002 VISTA 12:118402747-119004293
CIL_0008NJ CIL_0008NJ_0002 VISTA 12:118419668-119021135
CIL_0007QC CIL_0007QC_0002 VISTA 12:118425449-119026903
CIL_0007Z1 CIL_0007Z1_0002 VISTA 12:118534480-119136076
CIL_0007YM CIL_0007YM_0002 VISTA 12:118540044-119141444
CIL_0007UH CIL_0007UH_0002 VISTA 12:118543462-119144556

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 ISS DNA binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0009953 IMP dorsal/ventral pattern formation
GO:0009954 IMP proximal/distal pattern formation
GO:0030326 IMP embryonic limb morphogenesis
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000011870 sp8a sp8 transcription factor a protein_coding Danio_rerio
ENSDARG00000056666 sp8b sp8 transcription factor b protein_coding Danio_rerio
ENSG00000164651 SP8 Sp8 transcription factor protein_coding Homo_sapiens

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