C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: selection and upkeep of intraepithelial T cells 7
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000049214 Skint7 10090 + 4:111972923-111988223 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000055014 Skint7-001 111972927-111983106 protein_coding
  ENSMUST00000106568 Skint7-002 111972923-111985037 protein_coding
  ENSMUST00000142162 Skint7-003 111983950-111986424 retained_intron
  ENSMUST00000163281 Skint7-201 111972927-111988223 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastHeartLiverLungMuscleOvaryPlacentaTestisENSMUST00000055014ENSMUST00000106568ENSMUST00000142162ENSMUST00000163281
Transcript ID Adipose Bladder Brain Breast Heart Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000055014 N/A N/A N/A N/A N/A N/A N/A 0.023±0.00 N/A N/A 0.032±0.00
ENSMUST00000106568 N/A N/A N/A 0.075±0.00 N/A N/A N/A N/A N/A 0.029±0.00 0.109±0.00
ENSMUST00000142162 0.027±0.00 N/A 0.021±0.00 0.045±0.00 0.020±0.00 0.064±0.00 0.048±0.00 0.033±0.00 0.179±0.17 N/A 0.059±0.01
ENSMUST00000163281 N/A 0.317±0.00 0.025±0.00 0.228±0.12 N/A N/A N/A 0.039±0.00 N/A N/A 0.093±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000XH CIL_0000XH_000E CGP 4:111919392-111988223
CIL_0000XH CIL_0000XH_000B CGP 4:111972923-112029538

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000004109 CR846080.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000039257 si:ch73-137d22.1 si:ch73-137d22.1 protein_coding Danio_rerio
ENSDARG00000056798 zgc:123297 zgc:123297 protein_coding Danio_rerio
ENSDARG00000079170 zgc:162154 zgc:162154 protein_coding Danio_rerio

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