C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: synaptopodin 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000050315 Synpo2 10090 - 3:123076519-123236149 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000051443 Synpo2-001 123110964-123236147 protein_coding
  ENSMUST00000106426 Synpo2-005 123076519-123236147 protein_coding
  ENSMUST00000106427 Synpo2-004 123076519-123236147 protein_coding
  ENSMUST00000139160 Synpo2-003 123076519-123112810 protein_coding
  ENSMUST00000184403 Synpo2-002 123174853-123236149 processed_transcript
  ENSMUST00000184590 Synpo2-006 123108750-123112978 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000051443ENSMUST00000106426ENSMUST00000106427ENSMUST00000139160ENSMUST00000184590
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000051443 9.022±2.22 0.443±0.17 36.686±0.00 1.920±2.48 8.430±4.41 7.762±0.88 13.139±1.14 1.663±0.36 0.047±0.05 3.408±0.17 102.241±5.27 1.496±0.49 0.833±0.43 0.250±0.22
ENSMUST00000106426 17.230±0.06 0.407±0.08 22.864±0.00 0.055±0.02 0.879±0.00 5.095±0.82 N/A 0.279±0.06 0.029±0.01 1.074±0.20 N/A 3.437±1.17 2.710±0.00 0.317±0.04
ENSMUST00000106427 N/A N/A N/A N/A N/A N/A N/A N/A 0.025±0.01 N/A N/A N/A N/A 0.134±0.00
ENSMUST00000139160 11.267±0.00 N/A 33.362±0.01 N/A N/A N/A N/A N/A 0.018±0.01 2.174±0.00 N/A 2.256±0.81 0.648±0.72 0.099±0.00
ENSMUST00000184590 N/A N/A N/A N/A N/A N/A N/A N/A 0.035±0.00 N/A N/A N/A 1.252±0.00 0.587±0.29

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00005O CIL_00005O_0003 CGP 3:123006206-123236149
CIL_0005EP CIL_0005EP_0002 CGP 3:123076519-123365635

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003779 ISA actin binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005925 IEA focal adhesion
GO:0015629 IEA actin cytoskeleton
GO:0030018 ISS Z disc
GO:0051371 IDA muscle alpha-actinin binding
GO:0071889 IDA 14-3-3 protein binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000077157 SYNPO2 (1 of 2) synaptopodin 2 protein_coding Danio_rerio
ENSDARG00000079675 SYNPO2 (2 of 2) synaptopodin 2 protein_coding Danio_rerio
ENSG00000172403 SYNPO2 synaptopodin 2 protein_coding Homo_sapiens

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