C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000051285 Pcmtd1 10090 + 1:7088920-7173628 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000061280 Pcmtd1-001 7088920-7173628 protein_coding
  ENSMUST00000182114 Pcmtd1-006 7088930-7169598 protein_coding
  ENSMUST00000182306 Pcmtd1-003 7089104-7160902 processed_transcript
  ENSMUST00000182388 Pcmtd1-007 7154867-7163371 retained_intron
  ENSMUST00000182675 Pcmtd1-002 7147637-7170076 nonsense_mediated_decay
  ENSMUST00000182823 Pcmtd1-008 7089166-7172122 processed_transcript
  ENSMUST00000182892 Pcmtd1-004 7160085-7172618 retained_intron
  ENSMUST00000183204 Pcmtd1-005 7160557-7172659 retained_intron

Mus musculus EnsemblGRCm38

Genome
Exciting message
Genes
Gene structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000061280ENSMUST00000182114ENSMUST00000182823ENSMUST00000182892ENSMUST00000183204
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000061280 4.751±0.44 4.127±1.14 12.922±0.62 6.137±0.98 4.219±1.21 2.970±0.60 4.639±0.50 5.516±0.53 4.345±1.72 5.893±0.37 11.174±0.66 3.381±1.93 2.210±0.82 0.654±0.19
ENSMUST00000182114 N/A 15.921±5.59 N/A N/A 10.511±1.58 2.029±0.07 N/A N/A N/A 3.588±0.00 N/A 3.824±1.64 N/A 1.137±0.00
ENSMUST00000182823 6.287±0.15 8.456±0.72 8.708±1.14 6.697±2.44 5.898±1.55 1.402±0.00 4.164±0.34 2.366±0.43 3.670±1.68 5.331±1.44 5.568±0.38 4.793±1.79 2.210±0.34 0.369±0.06
ENSMUST00000182892 N/A N/A 3.262±0.07 2.730±0.29 N/A 1.589±0.48 N/A 1.739±0.76 3.464±2.36 1.572±0.00 N/A 2.441±1.16 0.901±0.32 0.439±0.27
ENSMUST00000183204 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.725±0.00 0.232±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00053O CIL_00053O_0002 CGP 1:6487231-7173628
CIL_00053R CIL_00053R_0002 CGP 1:7088920-9299878

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0004719 IEA protein-L-isoaspartate (D-aspartate) O-methyltransferase activity
GO:0005575 ND cellular_component
GO:0005737 IEA cytoplasm
GO:0006479 IEA protein methylation
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000053152 pcmtd1 protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 protein_coding Danio_rerio
ENSG00000168300 PCMTD1 protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 protein_coding Homo_sapiens

Loading