C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: COMM domain containing 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000051355 Commd1 10090 - 11:22896136-22982382 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000057843 Commd1-001 22899764-22978996 protein_coding
  ENSMUST00000071068 Commd1-005 22899759-22982252 protein_coding
  ENSMUST00000093270 Commd1-002 22956152-22982184 protein_coding
  ENSMUST00000159081 Commd1-003 22896136-22982382 protein_coding
  ENSMUST00000161944 Commd1-007 22899835-22956947 retained_intron
  ENSMUST00000162924 Commd1-006 22900023-22972859 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000071068ENSMUST00000093270ENSMUST00000159081ENSMUST00000161944ENSMUST00000162924
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000071068 N/A N/A N/A N/A N/A N/A N/A N/A N/A 26.522±2.59 N/A N/A N/A
ENSMUST00000093270 14.140±0.00 N/A N/A N/A N/A 15.852±0.00 N/A N/A N/A 38.669±5.36 N/A 50.789±0.00 N/A
ENSMUST00000159081 4.227±1.26 6.423±0.02 3.013±0.00 3.215±0.20 5.271±0.91 3.385±0.85 6.259±0.28 4.306±0.73 3.645±0.73 N/A 5.773±1.64 N/A 3.752±0.47
ENSMUST00000161944 N/A N/A 21.076±6.19 N/A N/A N/A N/A 20.697±4.98 N/A 20.032±2.34 34.943±15.91 28.055±14.40 86.893±0.00
ENSMUST00000162924 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 45.092±1.68

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003BY CIL_0003BY_0002 CGP 11:22834744-22982090
CIL_0004OO CIL_0004OO_0002 CGP 11:22834747-22982382

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005507 ISS copper ion binding
GO:0005634 ISS nucleus
GO:0005737 ISS cytoplasm
GO:0006878 ISA cellular copper ion homeostasis
GO:0031398 ISS positive regulation of protein ubiquitination
GO:0031462 ISS Cul2-RING ubiquitin ligase complex
GO:0032088 ISO negative regulation of NF-kappaB transcription factor activity
GO:0032434 ISS regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0055070 ISS copper ion homeostasis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000031203 commd1 copper metabolism (Murr1) domain containing 1 protein_coding Danio_rerio
ENSG00000173163 COMMD1 copper metabolism (Murr1) domain containing 1 protein_coding Homo_sapiens

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