C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RIKEN cDNA A630001G21 gene
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000052760 A630001G21Rik 10090 - 1:85717083-85778643 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000064788 A630001G21Rik-002 85717689-85736629 protein_coding
  ENSMUST00000159122 A630001G21Rik-001 85717083-85778643 protein_coding
  ENSMUST00000159320 A630001G21Rik-004 85717083-85736581 processed_transcript
  ENSMUST00000159325 A630001G21Rik-006 85726614-85736561 processed_transcript
  ENSMUST00000161453 A630001G21Rik-005 85718090-85736554 processed_transcript
  ENSMUST00000162038 A630001G21Rik-003 85717692-85736581 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000064788ENSMUST00000159122ENSMUST00000159320ENSMUST00000159325ENSMUST00000161453ENSMUST00000162038
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000064788 N/A 0.114±0.00 N/A 0.127±0.00 N/A N/A N/A 0.416±0.16 0.751±0.60 N/A 0.051±0.01 0.426±0.13 0.186±0.09 0.083±0.00
ENSMUST00000159122 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.078±0.00 N/A
ENSMUST00000159320 N/A N/A N/A 0.025±0.00 N/A N/A N/A N/A 0.068±0.02 N/A 0.077±0.03 0.133±0.00 0.064±0.01 0.058±0.02
ENSMUST00000159325 N/A 0.692±0.31 N/A N/A N/A N/A N/A N/A 0.288±0.13 N/A N/A 1.006±0.00 N/A N/A
ENSMUST00000161453 N/A 0.161±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.062±0.02 1.151±0.52 0.431±0.14 0.527±0.44
ENSMUST00000162038 0.832±0.36 0.888±0.62 1.336±0.00 N/A 2.599±0.28 0.927±0.51 0.528±0.27 0.481±0.17 0.406±0.43 2.033±0.00 0.122±0.00 0.503±0.31 0.151±0.08 0.076±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004AU CIL_0004AU_0005 CGP 1:85649988-85778643

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0005634 IEA nucleus
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000038133 zgc:113411 zgc:113411 protein_coding Danio_rerio
ENSDARG00000055359 BX569789.2 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000090449 BX569789.4 Uncharacterized protein protein_coding Danio_rerio

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