C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: protein tyrosine phosphatase, receptor type, T
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000053141 Ptprt 10090 - 2:161521990-162661147 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000109441 Ptprt-004 161527509-162661147 protein_coding
  ENSMUST00000109442 Ptprt-002 161526357-162661094 protein_coding
  ENSMUST00000109443 Ptprt-003 161521990-162661147 protein_coding
  ENSMUST00000109445 Ptprt-001 161521990-162661147 protein_coding
  ENSMUST00000129015 Ptprt-005 162012015-162135451 processed_transcript
  ENSMUST00000153770 Ptprt-006 161698009-161800155 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000109441ENSMUST00000109442ENSMUST00000109443ENSMUST00000109445ENSMUST00000129015
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000109441 0.003±0.00 0.039±0.00 N/A N/A 0.042±0.03 0.196±0.09 0.014±0.01 0.018±0.01 0.036±0.02 0.052±0.02 N/A 0.335±0.11 N/A 0.147±0.03
ENSMUST00000109442 N/A 0.035±0.01 N/A N/A 0.035±0.00 N/A N/A N/A N/A N/A N/A 0.551±0.05 0.002±0.00 0.033±0.00
ENSMUST00000109443 0.005±0.00 0.012±0.00 N/A 2.912±1.34 0.018±0.01 0.071±0.02 0.004±0.00 0.005±0.00 0.014±0.01 0.028±0.01 0.004±0.00 0.160±0.06 0.004±0.00 N/A
ENSMUST00000109445 0.005±0.00 0.012±0.00 0.039±0.02 1.349±1.11 0.021±0.01 0.143±0.07 0.004±0.00 0.005±0.00 0.024±0.01 0.038±0.01 0.024±0.01 0.205±0.10 0.004±0.00 0.199±0.08
ENSMUST00000129015 0.201±0.00 N/A N/A N/A 0.502±0.38 3.634±1.32 N/A N/A 0.392±0.05 1.509±0.12 0.391±0.00 3.692±0.77 0.144±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004E5 CIL_0004E5_0002 CGP 2:160946978-162661147
CIL_0004E4 CIL_0004E4_0002 CGP 2:161521990-162937121

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004725 IMP protein tyrosine phosphatase activity
GO:0005886 TAS plasma membrane
GO:0006470 IDA protein dephosphorylation
GO:0008013 IDA beta-catenin binding
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0016790 IDA thiolester hydrolase activity
GO:0035335 IEA peptidyl-tyrosine dephosphorylation
GO:0045294 IDA alpha-catenin binding
GO:0045295 IPI gamma-catenin binding
GO:0045296 IPI cadherin binding
GO:0051393 IDA alpha-actinin binding
GO:0070097 IPI delta-catenin binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000086147 protein tyrosine phosphatase, receptor type, T protein_coding Danio_rerio
ENSG00000196090 PTPRT protein tyrosine phosphatase, receptor type, T protein_coding Homo_sapiens

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