C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tripartite motif-containing 50
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000053388 Trim50 10090 + 5:135353295-135368005 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000065785 Trim50-001 135353296-135368005 protein_coding
  ENSMUST00000111180 Trim50-002 135353295-135367654 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000065785ENSMUST00000111180
Transcript ID Adipose Adrenal Bladder Brain Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000065785 0.034±0.02 0.049±0.00 0.005±0.00 0.033±0.00 0.050±0.02 N/A 0.022±0.01 0.028±0.02 0.016±0.00 0.519±0.22 0.092±0.06 0.268±0.19
ENSMUST00000111180 0.043±0.01 0.091±0.03 N/A 0.005±0.00 0.030±0.00 0.021±0.00 0.059±0.02 0.012±0.01 N/A 0.379±0.18 0.033±0.01 0.152±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005UT CIL_0005UT_0002 CGP 5:135353295-135376805

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0008152 IEA metabolic process
GO:0008270 IEA zinc ion binding
GO:0016235 IDA aggresome
GO:0016874 IEA ligase activity
GO:0070201 IDA regulation of establishment of protein localization

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000146755 TRIM50 tripartite motif containing 50 protein_coding Homo_sapiens
ENSG00000155428 TRIM74 tripartite motif containing 74 protein_coding Homo_sapiens
ENSG00000178809 TRIM73 tripartite motif containing 73 protein_coding Homo_sapiens

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