C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: transmembrane protein 39b
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000053730 Tmem39b 10090 - 4:129676355-129696838 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000102588 Tmem39b-001 129676355-129696838 protein_coding
  ENSMUST00000125445 Tmem39b-002 129676355-129696796 nonsense_mediated_decay
  ENSMUST00000137640 Tmem39b-003 129691968-129696620 protein_coding
  ENSMUST00000147668 Tmem39b-005 129692044-129696744 nonsense_mediated_decay
  ENSMUST00000154747 Tmem39b-004 129676599-129678890 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000102588ENSMUST00000125445ENSMUST00000137640ENSMUST00000154747
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000102588 5.487±1.96 4.035±1.60 6.084±0.78 16.215±2.81 4.674±1.40 4.995±1.49 2.261±0.56 6.128±0.87 3.902±2.29 3.377±0.52 1.031±0.38 10.685±5.34 7.162±4.47 17.794±3.65
ENSMUST00000125445 2.056±0.71 1.914±0.70 1.515±0.00 N/A 2.126±0.52 2.004±0.33 N/A 1.815±0.38 1.106±0.42 1.617±0.22 0.765±0.39 2.367±1.00 2.740±2.11 13.940±7.18
ENSMUST00000137640 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.950±0.00 N/A 9.153±0.00 N/A
ENSMUST00000154747 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.854±0.02 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008AA CIL_0008AA_0002 VISTA 4:129413466-130014337

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000018956 tmem39b transmembrane protein 39B protein_coding Danio_rerio
ENSG00000121775 TMEM39B transmembrane protein 39B protein_coding Homo_sapiens

Loading