C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: histocompatibility 2, T region locus 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000054128 H2-T3 10090 - 17:36185572-36190287 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000025312 H2-T3-005 36185572-36190220 protein_coding
  ENSMUST00000095300 H2-T3-003 36186588-36190122 nonsense_mediated_decay
  ENSMUST00000097329 H2-T3-010 36186579-36190122 protein_coding
  ENSMUST00000102675 H2-T3-001 36185573-36190287 protein_coding
  ENSMUST00000172663 H2-T3-008 36186576-36190122 nonsense_mediated_decay
  ENSMUST00000173133 H2-T3-006 36185686-36190134 nonsense_mediated_decay
  ENSMUST00000173435 H2-T3-007 36186576-36190122 retained_intron
  ENSMUST00000173577 H2-T3-004 36185677-36190251 retained_intron
  ENSMUST00000173629 H2-T3-009 36186576-36190122 nonsense_mediated_decay
  ENSMUST00000174101 H2-T3-002 36186588-36190122 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLiverLungOvaryPlacentaTestisENSMUST00000025312ENSMUST00000095300ENSMUST00000102675ENSMUST00000172663ENSMUST00000173133ENSMUST00000173435ENSMUST00000173577ENSMUST00000173629ENSMUST00000174101
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000025312 N/A N/A 0.018±0.00 N/A N/A 3.554±1.87 0.037±0.01 N/A N/A N/A N/A 0.051±0.00
ENSMUST00000095300 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.062±0.00 N/A N/A
ENSMUST00000102675 N/A N/A N/A N/A N/A 2.234±0.37 N/A N/A N/A N/A N/A N/A
ENSMUST00000172663 N/A 0.115±0.00 N/A N/A N/A N/A N/A N/A N/A 0.092±0.00 N/A N/A
ENSMUST00000173133 N/A N/A N/A N/A 0.040±0.02 5.188±1.68 N/A 0.058±0.00 0.047±0.00 0.126±0.08 N/A 0.034±0.00
ENSMUST00000173435 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.027±0.03 N/A
ENSMUST00000173577 N/A N/A N/A 0.024±0.02 N/A 1.325±0.00 N/A 0.013±0.01 0.023±0.00 0.076±0.01 N/A N/A
ENSMUST00000173629 0.046±0.02 N/A N/A 0.052±0.00 N/A N/A N/A N/A 0.052±0.02 0.093±0.00 N/A 0.048±0.02
ENSMUST00000174101 0.108±0.00 N/A N/A N/A N/A N/A 0.018±0.00 N/A 0.092±0.00 0.071±0.00 0.038±0.00 0.091±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001916 IEA positive regulation of T cell mediated cytotoxicity
GO:0002474 IEA antigen processing and presentation of peptide antigen via MHC class I
GO:0006955 IEA immune response
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0019882 IEA antigen processing and presentation
GO:0042605 IEA peptide antigen binding
GO:0042612 IEA MHC class I protein complex

Homologs

No Homologs available.

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