C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ArfGAP with GTPase domain, ankyrin repeat and PH domain 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000055013 Agap1 10090 + 1:89454806-89897617 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000027521 Agap1-001 89454806-89897617 protein_coding
  ENSMUST00000074945 Agap1-003 89580236-89895277 protein_coding
  ENSMUST00000185417 Agap1-004 89455256-89459706 retained_intron
  ENSMUST00000190096 Agap1-002 89454874-89890001 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000027521ENSMUST00000074945ENSMUST00000190096
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000027521 1.750±0.48 4.700±0.48 N/A 6.671±0.00 2.912±1.17 6.476±0.79 1.362±0.28 5.748±1.00 0.427±0.16 6.266±0.70 0.214±0.03 4.054±1.62 0.427±0.00 0.749±0.00
ENSMUST00000074945 3.206±1.29 1.271±0.32 0.822±0.00 12.783±5.67 3.084±1.03 3.078±0.00 1.540±0.54 1.275±0.03 0.134±0.01 2.351±0.10 1.299±0.16 3.386±2.05 1.045±0.27 0.125±0.00
ENSMUST00000190096 4.222±1.69 4.874±2.35 N/A 2.437±0.00 3.355±0.38 7.856±2.27 2.258±0.28 8.331±1.42 0.947±0.19 6.206±0.81 0.639±0.12 5.882±1.59 3.318±0.99 3.590±2.19

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003R3 CIL_0003R3_0002 CGP 1:89070415-89897617
CIL_0007U0 CIL_0007U0_0002 VISTA 1:89413750-90014911
CIL_0003RE CIL_0003RE_0002 CGP 1:89454806-89931179

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003924 ISA GTPase activity
GO:0005525 IEA GTP binding
GO:0005543 IEA phospholipid binding
GO:0005829 ISA cytosol
GO:0006184 ISA GTP catabolic process
GO:0007264 IEA small GTPase mediated signal transduction
GO:0008060 IEA ARF GTPase activator activity
GO:0008270 IEA zinc ion binding
GO:0015031 IEA protein transport
GO:0032312 IEA regulation of ARF GTPase activity
GO:0043547 IEA positive regulation of GTPase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000062123 agap1 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 protein_coding Danio_rerio
ENSG00000157985 AGAP1 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 protein_coding Homo_sapiens

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