C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: metastasis associated 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000055817 Mta3 10090 + 17:83706163-83821516 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000067826 Mta3-001 83706191-83814905 protein_coding
  ENSMUST00000112349 Mta3-005 83706163-83792875 protein_coding
  ENSMUST00000112350 Mta3-002 83706163-83792873 protein_coding
  ENSMUST00000112352 Mta3-004 83706163-83805423 protein_coding
  ENSMUST00000175920 Mta3-009 83795422-83804597 processed_transcript
  ENSMUST00000176054 Mta3-008 83784334-83820216 protein_coding
  ENSMUST00000176816 Mta3-007 83755634-83800240 protein_coding
  ENSMUST00000177069 Mta3-003 83706184-83821516 nonsense_mediated_decay
  ENSMUST00000177416 Mta3-006 83729164-83753868 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000067826ENSMUST00000112349ENSMUST00000112350ENSMUST00000112352ENSMUST00000175920ENSMUST00000176816ENSMUST00000177069
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000067826 4.907±1.35 6.097±0.86 14.351±1.59 3.356±0.07 5.940±2.31 6.529±2.05 1.355±0.00 5.425±1.21 4.285±2.59 5.406±0.98 0.464±0.12 8.143±2.21 14.660±8.58 3.476±1.16
ENSMUST00000112349 8.096±0.98 7.508±2.44 14.110±0.39 4.519±0.38 5.221±1.76 6.575±1.88 2.270±0.76 4.033±1.12 5.572±3.62 5.127±0.71 0.872±0.21 9.305±2.75 35.576±18.30 2.437±0.51
ENSMUST00000112350 6.314±0.49 N/A 10.470±1.75 N/A 5.891±0.98 5.918±0.69 3.277±0.61 4.101±1.19 8.250±5.42 3.521±0.93 1.226±0.07 7.369±3.74 38.023±14.76 5.221±1.30
ENSMUST00000112352 2.514±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 1.851±0.27 0.402±0.06 2.927±0.50 N/A N/A
ENSMUST00000175920 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 18.721±6.53
ENSMUST00000176816 N/A 16.957±2.57 N/A N/A N/A N/A N/A N/A N/A N/A N/A 18.197±9.24 183.275±13.77 6.709±0.00
ENSMUST00000177069 3.236±0.80 3.854±0.00 3.632±0.00 4.742±2.89 N/A N/A 0.697±0.10 N/A N/A 2.270±0.00 N/A 2.685±0.43 7.231±0.00 1.727±0.26

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003TA CIL_0003TA_0003 CGP 17:83585957-83821516

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0008278 IDA cohesin complex
GO:0008284 IMP positive regulation of cell proliferation
GO:0010971 IMP positive regulation of G2/M transition of mitotic cell cycle
GO:0016581 IDA NuRD complex
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0043565 IEA sequence-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000054903 mta3 metastasis associated 1 family, member 3 protein_coding Danio_rerio
ENSG00000057935 MTA3 metastasis associated 1 family, member 3 protein_coding Homo_sapiens

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