C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RIKEN cDNA 9330182L06 gene
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000056004 9330182L06Rik 10090 + 5:9266118-9481825 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000069538 9330182L06Rik-001 9266132-9480717 protein_coding
  ENSMUST00000115348 9330182L06Rik-002 9266149-9481825 protein_coding
  ENSMUST00000131626 9330182L06Rik-004 9266130-9411493 retained_intron
  ENSMUST00000134991 9330182L06Rik-006 9266132-9463983 protein_coding
  ENSMUST00000142202 9330182L06Rik-008 9417615-9422330 retained_intron
  ENSMUST00000152095 9330182L06Rik-003 9266127-9463599 nonsense_mediated_decay
  ENSMUST00000154662 9330182L06Rik-007 9266175-9461486 nonsense_mediated_decay
  ENSMUST00000155764 9330182L06Rik-005 9266118-9479736 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000069538ENSMUST00000115348ENSMUST00000131626ENSMUST00000134991ENSMUST00000142202ENSMUST00000152095ENSMUST00000154662ENSMUST00000155764
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000069538 0.322±0.00 0.675±0.25 0.648±0.15 2.983±0.52 N/A 0.173±0.07 N/A 0.044±0.03 0.033±0.01 1.056±0.40 N/A 0.262±0.13 0.026±0.00 0.052±0.01
ENSMUST00000115348 0.114±0.03 N/A N/A N/A N/A 0.220±0.13 0.012±0.00 0.037±0.00 N/A N/A N/A 0.107±0.00 0.004±0.00 N/A
ENSMUST00000131626 0.033±0.00 1.440±0.54 N/A N/A N/A 0.128±0.00 N/A 0.110±0.00 N/A 0.595±0.00 N/A 0.405±0.20 N/A N/A
ENSMUST00000134991 N/A 0.435±0.00 0.458±0.03 4.233±0.00 N/A 0.181±0.10 N/A 0.024±0.01 0.065±0.03 0.538±0.13 0.009±0.00 0.398±0.11 0.031±0.02 N/A
ENSMUST00000142202 N/A N/A N/A N/A 0.108±0.03 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152095 0.109±0.00 0.342±0.01 N/A N/A N/A N/A 0.022±0.00 N/A 0.046±0.02 N/A N/A 0.679±0.45 0.017±0.00 0.098±0.00
ENSMUST00000154662 0.025±0.01 0.667±0.26 N/A N/A 0.057±0.01 0.236±0.10 0.034±0.02 0.070±0.07 0.100±0.04 0.536±0.10 0.016±0.00 0.578±0.36 0.047±0.00 0.192±0.07
ENSMUST00000155764 0.206±0.00 0.456±0.10 N/A N/A 0.020±0.00 0.161±0.07 0.031±0.00 0.025±0.01 0.032±0.01 N/A N/A 0.358±0.21 0.013±0.00 0.252±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00034U CIL_00034U_0002 CGP 5:9118801-9481825

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000004386 si:dkey-153k10.9 si:dkey-153k10.9 protein_coding Danio_rerio
ENSDARG00000042213 si:ch211-233h19.2 si:ch211-233h19.2 protein_coding Danio_rerio
ENSG00000164659 KIAA1324L KIAA1324-like protein_coding Homo_sapiens

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