C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ubiquitin specific peptidase 39
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000056305 Usp39 10090 - 6:72318678-72345184 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000070345 Usp39-001 72318678-72345184 protein_coding
  ENSMUST00000154799 Usp39-002 72321300-72333368 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000070345
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000070345 9.051±1.63 7.706±2.48 8.998±0.06 10.879±6.10 10.886±3.43 6.372±0.70 5.788±0.26 7.485±1.80 15.066±11.13 10.736±1.79 7.207±1.66 12.565±3.04 24.523±3.37 10.818±5.15

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WR CIL_0007WR_0002 VISTA 6:71915186-72518828
CIL_00084P CIL_00084P_0002 VISTA 6:71915200-72518764
CIL_0003NX CIL_0003NX_0002 CGP 6:72318678-72353158

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005681 IEA spliceosomal complex
GO:0006397 IEA mRNA processing
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0007049 IEA cell cycle
GO:0008270 IEA zinc ion binding
GO:0008380 IEA RNA splicing
GO:0036459 IEA ubiquitinyl hydrolase activity
GO:0051301 IEA cell division

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000041908 usp39 ubiquitin specific peptidase 39 protein_coding Danio_rerio
ENSG00000168883 USP39 ubiquitin specific peptidase 39 protein_coding Homo_sapiens

Loading