C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ring finger protein, LIM domain interacting
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000056537 Rlim 10090 - X:103957163-103981284 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000070705 Rlim-002 103957163-103981284 protein_coding
  ENSMUST00000121153 Rlim-001 103957163-103981284 protein_coding
  ENSMUST00000135101 Rlim-003 103977795-103981284 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000070705ENSMUST00000121153
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000070705 3.084±0.49 2.560±1.00 4.561±1.47 3.186±0.48 2.352±0.79 2.183±0.90 1.994±0.41 3.417±0.74 2.802±1.03 4.352±0.46 1.099±0.37 4.386±2.02 21.524±11.19 2.443±0.39
ENSMUST00000121153 1.725±1.00 1.206±0.54 3.108±0.71 1.718±0.44 1.506±0.58 1.255±0.42 0.864±0.44 1.667±0.69 1.883±0.61 2.915±0.62 0.712±0.20 2.036±0.76 11.686±4.26 1.699±0.74

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006S9 CIL_0006S9_0002 CGP X:103697414-103981284
CIL_0006S6 CIL_0006S6_0002 CGP X:103957163-104201185

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IGI negative regulation of transcription from RNA polymerase II promoter
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006511 IDA ubiquitin-dependent protein catabolic process
GO:0008270 IEA zinc ion binding
GO:0016567 IEA protein ubiquitination
GO:0016874 IEA ligase activity
GO:0043433 IGI negative regulation of sequence-specific DNA binding transcription factor activity
GO:0060816 IDA random inactivation of X chromosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000079306 RLIM ring finger protein, LIM domain interacting protein_coding Danio_rerio
ENSG00000131263 RLIM ring finger protein, LIM domain interacting protein_coding Homo_sapiens

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