C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: chromodomain helicase DNA binding protein 9
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000056608 Chd9 10090 + 8:90828835-91054508 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000048665 Chd9-201 90828835-91054508 protein_coding
  ENSMUST00000109614 Chd9-202 90828835-91054508 protein_coding

Mus musculus EnsemblGRCm38

Genome
Exciting message
Genes
Gene structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000048665ENSMUST00000109614
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000048665 1.975±0.78 0.604±0.13 1.491±0.00 6.207±0.95 2.103±0.62 0.847±0.41 0.906±0.29 0.817±0.25 0.966±0.66 1.497±0.75 0.618±0.18 2.580±0.98 0.453±0.10 0.693±0.37
ENSMUST00000109614 1.482±0.58 2.212±0.52 2.950±0.03 1.582±0.76 1.970±1.00 2.535±0.49 0.973±0.47 1.428±0.31 0.977±0.47 1.823±0.54 0.649±0.20 2.712±1.39 0.885±0.16 0.223±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ON CIL_0007ON_0003 UCNEbase 8:88447800-92743752
CIL_00077Q CIL_00077Q_0002 CGP 8:90247040-91054508
CIL_0009C3 CIL_0009C3_0002 VISTA 8:90438604-91042411

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0004386 IEA helicase activity
GO:0005524 IEA ATP binding
GO:0005575 ND cellular_component
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008150 ND biological_process
GO:0016568 IEA chromatin modification

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000074498 chd9 chromodomain helicase DNA binding protein 9 protein_coding Danio_rerio
ENSG00000177200 CHD9 chromodomain helicase DNA binding protein 9 protein_coding Homo_sapiens

Loading