C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SET domain containing 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000056770 Setd3 10090 - 12:108106431-108179314 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000071095 Setd3-001 108106431-108179314 protein_coding
  ENSMUST00000109879 Setd3-007 108116775-108179216 protein_coding
  ENSMUST00000125210 Setd3-006 108112130-108115083 processed_transcript
  ENSMUST00000125916 Setd3-005 108157984-108179213 protein_coding
  ENSMUST00000132682 Setd3-002 108107038-108179227 nonsense_mediated_decay
  ENSMUST00000147466 Setd3-003 108117034-108179263 nonsense_mediated_decay
  ENSMUST00000148119 Setd3-004 108106666-108114947 retained_intron
  ENSMUST00000169951 Setd3-008 108118297-108163009 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000071095ENSMUST00000109879ENSMUST00000132682ENSMUST00000147466ENSMUST00000148119
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000071095 15.095±5.94 4.269±2.00 30.605±0.40 15.427±2.52 5.585±2.70 8.207±4.33 10.692±3.72 15.993±5.93 15.356±8.12 8.276±3.89 40.232±0.84 8.705±8.53 15.555±5.56 17.960±6.41
ENSMUST00000109879 3.740±0.00 2.334±0.31 N/A N/A 2.129±0.26 2.104±0.55 N/A N/A 2.365±0.28 2.533±0.06 N/A 2.209±0.44 N/A N/A
ENSMUST00000132682 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.426±1.41 6.163±0.83 N/A
ENSMUST00000147466 N/A N/A N/A N/A 2.190±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000148119 3.817±0.45 2.378±0.29 N/A 3.771±0.13 1.941±0.29 2.737±0.17 N/A N/A 2.303±0.49 2.997±0.72 N/A 2.704±1.49 2.167±0.02 2.355±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007KT CIL_0007KT_0002 UCNEbase 12:107085268-108123079
CIL_0005H1 CIL_0005H1_0002 CGP 12:107910403-108179314
CIL_0009CK CIL_0009CK_0002 VISTA 12:107949271-108552884
CIL_0003HD CIL_0003HD_0002 CGP 12:108106431-108203359

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000790 IDA nuclear chromatin
GO:0001102 IPI RNA polymerase II activating transcription factor binding
GO:0003713 ISS transcription coactivator activity
GO:0006351 IEA transcription, DNA-templated
GO:0010452 ISS histone H3-K36 methylation
GO:0018022 IEA peptidyl-lysine methylation
GO:0018023 ISS peptidyl-lysine trimethylation
GO:0018026 ISS peptidyl-lysine monomethylation
GO:0018027 ISS peptidyl-lysine dimethylation
GO:0042800 IDA histone methyltransferase activity (H3-K4 specific)
GO:0045893 ISS positive regulation of transcription, DNA-templated
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0046975 ISS histone methyltransferase activity (H3-K36 specific)
GO:0051149 IMP positive regulation of muscle cell differentiation
GO:0051568 IDA histone H3-K4 methylation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000016513 setd3 SET domain containing 3 protein_coding Danio_rerio
ENSG00000183576 SETD3 SET domain containing 3 protein_coding Homo_sapiens

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