C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: src family associated phosphoprotein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000057058 Skap1 10090 + 11:96464593-96759130 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000071510 Skap1-009 96464627-96758941 protein_coding
  ENSMUST00000100519 Skap1-003 96464600-96493718 protein_coding
  ENSMUST00000100521 Skap1-008 96464593-96759130 protein_coding
  ENSMUST00000103154 Skap1-001 96464593-96758941 protein_coding
  ENSMUST00000107662 Skap1-004 96464633-96582691 protein_coding
  ENSMUST00000107663 Skap1-002 96464681-96678371 protein_coding
  ENSMUST00000123814 Skap1-006 96708235-96713202 retained_intron
  ENSMUST00000127639 Skap1-005 96489861-96704431 retained_intron
  ENSMUST00000136836 Skap1-007 96464624-96732439 retained_intron
  ENSMUST00000149988 Skap1-010 96483782-96493718 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000071510ENSMUST00000100519ENSMUST00000100521ENSMUST00000103154ENSMUST00000107662ENSMUST00000107663ENSMUST00000123814ENSMUST00000127639ENSMUST00000136836ENSMUST00000149988
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000071510 0.358±0.19 N/A 0.802±0.12 0.341±0.02 4.497±1.35 0.096±0.00 0.193±0.07 0.357±0.17 0.059±0.05 0.693±0.26 0.391±0.35 0.677±0.40 0.046±0.03 0.243±0.00
ENSMUST00000100519 N/A N/A N/A 0.236±0.00 N/A 0.448±0.19 0.112±0.00 0.206±0.00 0.061±0.00 0.563±0.00 N/A 0.746±0.33 0.038±0.00 N/A
ENSMUST00000100521 0.070±0.00 0.602±0.19 N/A 0.155±0.00 N/A N/A 0.072±0.00 0.281±0.00 0.118±0.09 N/A 0.031±0.00 0.308±0.07 0.025±0.00 N/A
ENSMUST00000103154 0.200±0.13 0.637±0.21 0.633±0.00 0.368±0.26 3.258±1.14 0.437±0.26 0.104±0.00 0.597±0.12 0.110±0.05 0.795±0.38 N/A 0.770±0.37 0.046±0.00 0.427±0.14
ENSMUST00000107662 N/A N/A N/A N/A N/A N/A N/A 0.067±0.00 0.006±0.00 N/A N/A N/A N/A N/A
ENSMUST00000107663 N/A N/A N/A 0.276±0.00 3.787±1.07 0.381±0.15 N/A 0.538±0.18 0.074±0.00 N/A N/A 0.599±0.26 N/A N/A
ENSMUST00000123814 N/A N/A N/A N/A N/A N/A 0.056±0.00 N/A 0.023±0.00 N/A N/A 0.712±0.10 N/A N/A
ENSMUST00000127639 N/A N/A N/A 0.714±0.00 N/A N/A N/A N/A 0.056±0.00 N/A N/A N/A 0.100±0.00 N/A
ENSMUST00000136836 N/A N/A N/A N/A N/A N/A N/A N/A 0.048±0.01 N/A N/A 0.138±0.00 N/A N/A
ENSMUST00000149988 N/A N/A N/A N/A N/A 0.173±0.00 0.048±0.00 0.108±0.03 N/A N/A N/A 0.160±0.01 0.014±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZM CIL_0007ZM_0002 VISTA 11:95992065-96592579
CIL_00097B CIL_00097B_0002 VISTA 11:96441475-97042608

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005886 IEA plasma membrane
GO:0005911 IDA cell-cell junction
GO:0019901 IEA protein kinase binding
GO:0019903 IEA protein phosphatase binding
GO:0032403 IEA protein complex binding
GO:0042169 IEA SH2 domain binding
GO:0045893 IEA positive regulation of transcription, DNA-templated
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0050852 IEA T cell receptor signaling pathway

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000001498 skap1 src kinase associated phosphoprotein 1 protein_coding Danio_rerio
ENSG00000141293 SKAP1 src kinase associated phosphoprotein 1 protein_coding Homo_sapiens

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