C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tachykinin 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000061762 Tac1 10090 + 6:7554879-7565834 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000090679 Tac1-004 7555074-7562976 protein_coding
  ENSMUST00000184481 Tac1-003 7562368-7565834 processed_transcript
  ENSMUST00000184986 Tac1-002 7555096-7562700 protein_coding
  ENSMUST00000185130 Tac1-005 7556091-7559114 protein_coding
  ENSMUST00000185187 Tac1-001 7554879-7562977 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENSMUST00000090679ENSMUST00000184481ENSMUST00000184986ENSMUST00000185130ENSMUST00000185187
Transcript ID Bladder Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000090679 0.056±0.00 7.837±1.52 0.176±0.10 4.288±1.25 0.313±0.22 0.043±0.04 N/A 0.085±0.00 0.554±0.27 0.027±0.00 N/A
ENSMUST00000184481 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.400±2.31
ENSMUST00000184986 0.052±0.00 30.950±36.43 0.217±0.00 2.241±0.00 N/A 0.043±0.00 0.116±0.00 N/A 1.036±0.58 0.059±0.02 N/A
ENSMUST00000185130 N/A N/A N/A N/A N/A N/A N/A N/A 0.366±0.00 N/A N/A
ENSMUST00000185187 0.055±0.00 10.002±6.94 0.116±0.00 4.858±1.15 0.149±0.01 0.018±0.01 N/A N/A 0.318±0.15 0.039±0.03 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003BH CIL_0003BH_0003 CGP 6:6956004-7565834
CIL_0005L4 CIL_0005L4_0003 CGP 6:7554879-7693254

Gene Ontology
GO IDEvidence TypeGO Description
GO:0002675 IEA positive regulation of acute inflammatory response
GO:0005515 IEA protein binding
GO:0005576 IDA extracellular region
GO:0005615 IEA extracellular space
GO:0005886 IEA plasma membrane
GO:0006954 IDA inflammatory response
GO:0007204 IEA positive regulation of cytosolic calcium ion concentration
GO:0007217 IEA tachykinin receptor signaling pathway
GO:0007218 IEA neuropeptide signaling pathway
GO:0007268 IEA synaptic transmission
GO:0007616 IEA long-term memory
GO:0008217 IEA regulation of blood pressure
GO:0008306 IEA associative learning
GO:0009725 IEA response to hormone
GO:0010459 IEA negative regulation of heart rate
GO:0010634 IEA positive regulation of epithelial cell migration
GO:0019233 IMP sensory perception of pain
GO:0030424 IDA axon
GO:0031835 IEA substance P receptor binding
GO:0032224 IEA positive regulation of synaptic transmission, cholinergic
GO:0032230 IEA positive regulation of synaptic transmission, GABAergic
GO:0032496 IEA response to lipopolysaccharide
GO:0035815 IEA positive regulation of renal sodium excretion
GO:0043025 IDA neuronal cell body
GO:0043278 IEA response to morphine
GO:0045760 IEA positive regulation of action potential
GO:0045778 IEA positive regulation of ossification
GO:0046878 IEA positive regulation of saliva secretion
GO:0048265 IMP response to pain
GO:0050671 IEA positive regulation of lymphocyte proliferation
GO:0051496 IEA positive regulation of stress fiber assembly
GO:2000854 IEA positive regulation of corticosterone secretion

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000014490 tac1 tachykinin 1 protein_coding Danio_rerio
ENSG00000006128 TAC1 tachykinin, precursor 1 protein_coding Homo_sapiens

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