C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RIKEN cDNA 4430402I18 gene
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000064202 4430402I18Rik 10090 - 19:28893042-28967800 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000025872 4430402I18Rik-001 28923064-28964154 protein_coding
  ENSMUST00000159655 4430402I18Rik-004 28923533-28929227 processed_transcript
  ENSMUST00000160542 4430402I18Rik-007 28923688-28963587 protein_coding
  ENSMUST00000161813 4430402I18Rik-005 28948731-28963908 protein_coding
  ENSMUST00000162110 4430402I18Rik-003 28923530-28967800 protein_coding
  ENSMUST00000164777 4430402I18Rik-006 28923688-28963587 protein_coding
  ENSMUST00000175647 4430402I18Rik-002 28901268-28967730 nonsense_mediated_decay
  ENSMUST00000179171 4430402I18Rik-201 28893042-28911879 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000025872ENSMUST00000159655ENSMUST00000161813ENSMUST00000162110ENSMUST00000164777ENSMUST00000179171
Transcript ID Adipose Brain Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000025872 N/A N/A N/A 1.845±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000159655 N/A N/A N/A N/A N/A 4.491±0.00 N/A N/A N/A N/A 113.843±0.00
ENSMUST00000161813 N/A N/A N/A 13.929±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162110 N/A N/A N/A 2.334±0.60 N/A N/A N/A 0.764±0.00 N/A N/A 97.875±30.77
ENSMUST00000164777 N/A N/A N/A N/A N/A N/A N/A 0.886±0.00 N/A N/A N/A
ENSMUST00000179171 4.545±1.84 7.560±6.55 12.257±2.26 N/A 30.141±5.74 N/A 5.249±0.93 0.508±0.08 6.064±2.09 5.252±3.25 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000NI CIL_0000NI_0002 CGP 19:28258851-28913960
CIL_0000NJ CIL_0000NJ_0002 CGP 19:28835049-28967800
CIL_0000NK CIL_0000NK_0002 CGP 19:28893042-28967800

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000004874 spata6l spermatogenesis associated 6-like protein_coding Danio_rerio
ENSG00000106686 SPATA6L spermatogenesis associated 6-like protein_coding Homo_sapiens

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