C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: interferon, alpha-inducible protein 27
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000064215 Ifi27 10090 + 12:103434211-103440239 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000066701 Ifi27-002 103434212-103440239 protein_coding
  ENSMUST00000076702 Ifi27-005 103434211-103440207 protein_coding
  ENSMUST00000076788 Ifi27-004 103434211-103440207 protein_coding
  ENSMUST00000079294 Ifi27-003 103434211-103440207 protein_coding
  ENSMUST00000085065 Ifi27-001 103434259-103440239 protein_coding
  ENSMUST00000122905 Ifi27-008 103434245-103437636 retained_intron
  ENSMUST00000140838 Ifi27-006 103434292-103437528 protein_coding
  ENSMUST00000148824 Ifi27-007 103434285-103436973 retained_intron
  ENSMUST00000153670 Ifi27-009 103437627-103440239 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000066701ENSMUST00000085065ENSMUST00000122905ENSMUST00000140838ENSMUST00000148824ENSMUST00000153670
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000066701 211.724±111.63 234.409±45.29 18.273±2.05 1.194±0.75 167.397±52.69 31.356±4.35 18.444±5.11 56.420±6.92 31.856±26.43 53.095±3.49 4.755±0.83 51.369±11.18 6.775±4.74 3.657±0.42
ENSMUST00000085065 113.721±30.22 88.220±11.86 40.525±5.49 0.845±0.01 111.060±17.39 15.201±1.13 13.888±3.96 32.915±3.32 11.662±5.06 32.139±3.12 10.414±1.04 38.764±8.93 7.845±3.95 7.161±0.38
ENSMUST00000122905 N/A N/A 15.958±3.85 2.485±1.69 70.173±0.00 N/A N/A N/A N/A N/A 4.758±0.41 32.462±3.44 4.688±2.37 N/A
ENSMUST00000140838 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.611±0.00 N/A
ENSMUST00000148824 N/A 145.982±6.94 21.513±7.75 4.542±0.00 71.900±0.00 12.780±0.98 9.966±1.79 N/A 4.751±0.00 24.563±1.04 N/A 42.644±3.48 5.720±3.84 2.752±0.76
ENSMUST00000153670 188.611±57.59 444.654±76.72 26.307±7.18 4.180±4.21 273.481±80.50 41.966±6.75 32.148±9.70 64.648±8.97 31.873±17.31 77.606±11.84 9.515±1.97 156.106±54.28 14.769±10.11 10.910±1.17

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003QS CIL_0003QS_0002 CGP 12:103407976-103440239
CIL_00061B CIL_00061B_0008 CGP 12:103434211-103443680

Gene Ontology
GO IDEvidence TypeGO Description
GO:0016021 IEA integral component of membrane
GO:0032355 IEA response to estradiol
GO:0034097 IEA response to cytokine
GO:0046825 IMP regulation of protein export from nucleus
GO:0060135 IEA maternal process involved in female pregnancy

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000017489 zgc:123068 zgc:123068 protein_coding Danio_rerio
ENSDARG00000039243 zgc:152791 zgc:152791 protein_coding Danio_rerio
ENSDARG00000074217 si:dkey-188i13.6 si:dkey-188i13.6 protein_coding Danio_rerio
ENSDARG00000074754 si:dkey-188i13.9 si:dkey-188i13.9 protein_coding Danio_rerio
ENSDARG00000075151 si:dkey-188i13.10 si:dkey-188i13.10 protein_coding Danio_rerio
ENSDARG00000078389 si:dkey-188i13.7 si:dkey-188i13.7 protein_coding Danio_rerio
ENSDARG00000092895 si:dkey-188i13.11 si:dkey-188i13.11 protein_coding Danio_rerio
ENSG00000165948 IFI27L1 interferon, alpha-inducible protein 27-like 1 protein_coding Homo_sapiens
ENSG00000165949 IFI27 interferon, alpha-inducible protein 27 protein_coding Homo_sapiens

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