C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: forkhead box D3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000067261 Foxd3 10090 + 4:99656299-99658622 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000087285 Foxd3-001 99656299-99658622 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000087285
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000087285 0.159±0.02 0.697±0.31 1.383±0.46 0.983±0.35 0.427±0.13 1.457±0.19 0.318±0.08 0.053±0.03 0.026±0.02 0.224±0.11 0.591±0.09 0.130±0.05 0.087±0.08 0.176±0.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089A CIL_00089A_0002 VISTA 4:99074142-99675600
CIL_0007KW CIL_0007KW_0002 UCNEbase 4:99267882-99771733
CIL_0008AH CIL_0008AH_0002 VISTA 4:99273882-99874766
CIL_0002G4 CIL_0002G4_0002 CGP 4:99656299-99763460

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000790 IEA nuclear chromatin
GO:0000977 IEA RNA polymerase II regulatory region sequence-specific DNA binding
GO:0001227 IEA RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription
GO:0001701 IDA in utero embryonic development
GO:0001829 IMP trophectodermal cell differentiation
GO:0001892 IMP embryonic placenta development
GO:0003677 IEA DNA binding
GO:0003690 IEA double-stranded DNA binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0005515 IEA protein binding
GO:0005634 IC nucleus
GO:0005667 TAS transcription factor complex
GO:0006351 TAS transcription, DNA-templated
GO:0044212 IDA transcription regulatory region DNA binding
GO:0045944 ISS positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000187140 FOXD3 forkhead box D3 protein_coding Homo_sapiens

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