C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: synaptotagmin XI
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000068923 Syt11 10090 - 3:88744700-88775164 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000090945 Syt11-201 88744701-88772599 protein_coding
  ENSMUST00000107503 Syt11-003 88744700-88752051 protein_coding
  ENSMUST00000107505 Syt11-001 88744700-88775164 protein_coding
  ENSMUST00000130869 Syt11-002 88772714-88775152 processed_transcript
  ENSMUST00000183267 Syt11-004 88747472-88762384 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000090945ENSMUST00000107503ENSMUST00000107505ENSMUST00000183267
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000090945 3.793±2.64 4.578±0.93 3.484±0.01 60.943±15.31 1.912±0.68 3.658±0.30 1.927±0.42 1.614±0.56 0.284±0.24 3.136±0.38 0.838±0.24 6.341±2.39 0.720±0.27 N/A
ENSMUST00000107503 N/A N/A 0.853±0.00 50.259±0.00 1.373±0.77 N/A N/A N/A 0.226±0.13 N/A N/A 1.805±0.25 0.665±0.02 1.656±0.00
ENSMUST00000107505 0.804±0.39 1.009±0.09 0.625±0.00 N/A 0.949±0.38 0.399±0.00 1.645±0.18 1.269±0.58 0.273±0.14 0.705±0.14 0.614±0.29 0.781±0.09 0.272±0.04 6.955±3.46
ENSMUST00000183267 1.973±0.84 N/A N/A 70.666±0.00 N/A N/A 2.259±0.00 N/A N/A N/A N/A 3.710±0.00 0.816±0.30 7.945±0.57

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008P5 CIL_0008P5_0002 VISTA 3:88218217-88823366
CIL_000898 CIL_000898_0002 VISTA 3:88224783-88827970

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005215 IEA transporter activity
GO:0005509 ISS calcium ion binding
GO:0005515 IPI protein binding
GO:0005544 ISS calcium-dependent phospholipid binding
GO:0005887 IDA integral component of plasma membrane
GO:0006810 IEA transport
GO:0008021 IEA synaptic vesicle
GO:0030054 IEA cell junction

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000056105 syt11b synaptotagmin XIb protein_coding Danio_rerio
ENSDARG00000057913 syt11a synaptotagmin XIa protein_coding Danio_rerio
ENSG00000132718 SYT11 synaptotagmin XI protein_coding Homo_sapiens

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