C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: repulsive guidance molecule family member A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000070509 Rgma 10090 + 7:73375520-73419899 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000094312 Rgma-001 73375520-73419899 protein_coding
  ENSMUST00000119206 Rgma-002 73375520-73419899 protein_coding
  ENSMUST00000128471 Rgma-004 73391160-73409451 protein_coding
  ENSMUST00000139780 Rgma-003 73391227-73419899 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000094312ENSMUST00000119206ENSMUST00000128471ENSMUST00000139780
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000094312 8.675±4.08 1.044±0.18 2.725±0.00 15.556±10.63 5.292±2.26 4.882±0.76 3.620±0.29 0.284±0.01 0.052±0.03 1.587±0.34 1.634±0.67 10.527±3.97 1.083±0.59 1.260±0.62
ENSMUST00000119206 N/A N/A N/A N/A N/A N/A N/A N/A 0.016±0.00 N/A N/A N/A 0.812±0.00 0.354±0.00
ENSMUST00000128471 N/A N/A N/A N/A N/A N/A N/A N/A 0.195±0.00 N/A N/A N/A N/A N/A
ENSMUST00000139780 11.849±0.67 4.464±0.69 2.288±0.37 9.285±5.90 7.525±3.78 2.645±0.94 4.132±1.29 2.418±0.24 0.086±0.05 6.794±0.41 5.474±2.57 5.356±2.35 1.508±1.17 2.253±0.39

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006GY CIL_0006GY_0002 CGP 7:73375520-73541746

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001843 IMP neural tube closure
GO:0001934 ISO positive regulation of protein phosphorylation
GO:0005515 IPI protein binding
GO:0005886 IEA plasma membrane
GO:0009986 IDA cell surface
GO:0015026 IGI coreceptor activity
GO:0030509 IGI BMP signaling pathway
GO:0030510 IDA regulation of BMP signaling pathway
GO:0031225 IEA anchored component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000012248 rgma RGM domain family, member A protein_coding Danio_rerio
ENSG00000182175 RGMA repulsive guidance molecule family member a protein_coding Homo_sapiens

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