C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000073131 Vma21 10090 + X:71815924-71839757 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000114575 Vma21-003 71816790-71824706 protein_coding
  ENSMUST00000114576 Vma21-001 71816758-71824706 protein_coding
  ENSMUST00000114577 Vma21-002 71815924-71824706 protein_coding
  ENSMUST00000138979 Vma21-004 71816813-71820984 processed_transcript
  ENSMUST00000154054 Vma21-005 71816790-71839757 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000114575ENSMUST00000114576ENSMUST00000114577ENSMUST00000154054
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000114575 N/A 1.307±0.00 N/A N/A 0.431±0.00 0.330±0.10 N/A N/A N/A N/A N/A 0.544±0.11 N/A 0.121±0.00
ENSMUST00000114576 3.629±0.67 11.086±1.20 5.574±0.77 6.427±3.04 2.580±1.00 2.057±0.60 1.415±0.29 4.513±0.66 4.106±0.71 3.339±0.19 1.099±0.37 2.843±1.69 3.752±2.59 0.678±0.32
ENSMUST00000114577 0.552±0.11 N/A N/A N/A 0.796±0.56 0.396±0.17 0.736±0.09 0.438±0.00 N/A 0.897±0.04 3.014±0.89 0.728±0.22 1.905±1.01 N/A
ENSMUST00000154054 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.893±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009DG CIL_0009DG_0002 VISTA X:71400355-72001555
CIL_0001AU CIL_0001AU_0002 CGP X:71663667-71839757

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005789 ISS endoplasmic reticulum membrane
GO:0016021 IEA integral component of membrane
GO:0030127 ISS COPII vesicle coat
GO:0070072 ISS vacuolar proton-transporting V-type ATPase complex assembly

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000093945 VMA21 VMA21 vacuolar H+-ATPase homolog (S. cerevisiae) protein_coding Danio_rerio
ENSG00000160131 VMA21 VMA21 vacuolar H+-ATPase homolog (S. cerevisiae) protein_coding Homo_sapiens

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