C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: asparagine-linked glycosylation 6 (alpha-1,3,-glucosyltransferase)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000073792 Alg6 10090 + 4:99715664-99763460 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000097961 Alg6-001 99715665-99763460 protein_coding
  ENSMUST00000107004 Alg6-004 99715676-99752885 protein_coding
  ENSMUST00000124147 Alg6-003 99719152-99739473 retained_intron
  ENSMUST00000137473 Alg6-002 99715664-99730223 retained_intron
  ENSMUST00000139799 Alg6-006 99715676-99753076 protein_coding
  ENSMUST00000141870 Alg6-005 99715676-99746384 processed_transcript
  ENSMUST00000144805 Alg6-007 99715665-99762311 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000097961ENSMUST00000107004ENSMUST00000137473ENSMUST00000141870ENSMUST00000144805
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000097961 0.932±0.56 1.114±0.54 2.125±1.29 3.402±0.00 0.901±0.26 1.990±0.26 0.557±0.20 0.921±0.27 2.990±2.37 0.773±0.18 N/A 1.213±0.45 2.219±2.22 0.604±0.14
ENSMUST00000107004 1.906±0.00 0.694±0.00 N/A N/A 1.237±0.36 N/A N/A 1.308±0.36 0.755±0.00 1.307±0.37 N/A 1.726±0.40 2.027±0.00 N/A
ENSMUST00000137473 0.247±0.16 0.108±0.03 N/A N/A 0.230±0.06 0.226±0.03 0.158±0.00 N/A 0.159±0.00 0.247±0.04 N/A 0.288±0.11 N/A 0.150±0.03
ENSMUST00000141870 N/A N/A N/A N/A N/A 2.862±0.00 N/A 2.493±0.00 N/A N/A N/A 2.176±0.12 N/A N/A
ENSMUST00000144805 0.563±0.06 0.342±0.20 0.477±0.00 0.651±0.31 0.258±0.07 0.491±0.11 0.250±0.02 0.207±0.02 0.538±0.17 0.406±0.07 0.301±0.01 0.747±0.38 0.711±0.30 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007KW CIL_0007KW_0002 UCNEbase 4:99267882-99771733
CIL_0008AH CIL_0008AH_0002 VISTA 4:99273882-99874766
CIL_0002G4 CIL_0002G4_0002 CGP 4:99656299-99763460
CIL_0002G7 CIL_0002G7_0002 CGP 4:99715664-99929813

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005789 IEA endoplasmic reticulum membrane
GO:0006487 IEA protein N-linked glycosylation
GO:0008152 IEA metabolic process
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0016758 IEA transferase activity, transferring hexosyl groups
GO:0046527 IEA glucosyltransferase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000017617 alg6 asparagine-linked glycosylation 6 homolog (S. cerevisiae, alpha-1,3-glucosyltransferase) protein_coding Danio_rerio
ENSG00000088035 ALG6 ALG6, alpha-1,3-glucosyltransferase protein_coding Homo_sapiens

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