C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RIKEN cDNA 2210404O09 gene
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000078546 2210404O09Rik 10090 - 17:21879570-21909926 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000106026 2210404O09Rik-201 21879570-21908092 protein_coding
  ENSMUST00000185948 2210404O09Rik-004 21908036-21909925 retained_intron
  ENSMUST00000186313 2210404O09Rik-003 21892724-21908165 processed_transcript
  ENSMUST00000189719 2210404O09Rik-002 21891470-21909639 processed_transcript
  ENSMUST00000190066 2210404O09Rik-001 21879570-21909926 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000106026ENSMUST00000185948ENSMUST00000186313ENSMUST00000189719ENSMUST00000190066
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000106026 0.291±0.00 0.226±0.00 0.982±0.00 1.185±0.28 0.351±0.09 0.395±0.19 0.081±0.04 0.098±0.04 0.183±0.07 0.324±0.06 0.118±0.09 0.411±0.16 1.071±0.50 0.270±0.14
ENSMUST00000185948 0.607±0.20 N/A N/A N/A 0.622±0.36 0.695±0.16 0.163±0.09 0.307±0.23 0.285±0.14 1.033±0.12 N/A 0.448±0.26 N/A 0.197±0.00
ENSMUST00000186313 0.566±0.00 N/A N/A N/A 0.508±0.00 0.519±0.25 0.075±0.00 0.151±0.04 0.368±0.07 0.196±0.00 0.290±0.15 0.440±0.00 N/A 0.272±0.07
ENSMUST00000189719 0.232±0.00 N/A N/A N/A 0.129±0.00 0.258±0.01 0.124±0.06 0.102±0.04 0.216±0.06 N/A N/A 0.816±0.36 0.423±0.01 0.204±0.04
ENSMUST00000190066 0.398±0.14 N/A N/A 0.769±0.00 0.211±0.03 0.280±0.15 N/A 0.090±0.02 0.129±0.06 0.277±0.09 0.112±0.03 0.365±0.20 0.283±0.17 0.242±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0005575 ND cellular_component
GO:0005622 IEA intracellular
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008150 ND biological_process
GO:0046872 IEA metal ion binding

Homologs

No Homologs available.

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