C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: selection and upkeep of intraepithelial T cells 5
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000078598 Skint5 10090 - 4:113477891-113999503 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000153413 Skint5-003 113940546-113999503 retained_intron
  ENSMUST00000169631 Skint5-001 113477891-113999503 protein_coding
  ENSMUST00000170105 Skint5-002 113477891-113999503 protein_coding
  ENSMUST00000171627 Skint5-201 113846238-113999503 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastMuscleTestisENSMUST00000153413ENSMUST00000170105
Transcript ID Adrenal Breast Muscle Testis
ENSMUST00000153413 N/A 0.684±0.13 N/A 0.074±0.03
ENSMUST00000170105 0.123±0.00 0.020±0.00 0.011±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000XH CIL_0000XH_000F CGP 4:112804616-113999503

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000004109 CR846080.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000039257 si:ch73-137d22.1 si:ch73-137d22.1 protein_coding Danio_rerio
ENSDARG00000056798 zgc:123297 zgc:123297 protein_coding Danio_rerio
ENSDARG00000079170 zgc:162154 zgc:162154 protein_coding Danio_rerio

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