C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: selection and upkeep of intraepithelial T cells 8
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000078599 Skint8 10090 + 4:111919392-111950358 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000106572 Skint8-004 111919398-111939803 protein_coding
  ENSMUST00000124862 Skint8-001 111919493-111938026 retained_intron
  ENSMUST00000129547 Skint8-002 111925085-111928845 processed_transcript
  ENSMUST00000147395 Skint8-003 111919392-111928697 processed_transcript
  ENSMUST00000165046 Skint8-201 111919555-111950358 protein_coding

Mus musculus EnsemblGRCm38

Genome
Exciting message
Genes
Gene structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000124862ENSMUST00000129547ENSMUST00000165046
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000124862 0.050±0.02 0.139±0.01 0.019±0.00 0.038±0.03 N/A 0.093±0.00 0.024±0.00 0.028±0.00 0.028±0.03 0.074±0.04 N/A 0.168±0.12 0.026±0.01
ENSMUST00000129547 0.060±0.04 0.055±0.01 N/A 0.056±0.01 0.411±0.21 0.165±0.12 0.022±0.01 0.079±0.07 0.033±0.04 0.132±0.04 0.018±0.00 0.108±0.06 0.021±0.01
ENSMUST00000165046 N/A N/A 0.039±0.01 N/A N/A N/A N/A N/A 0.009±0.00 0.043±0.00 N/A N/A 0.012±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000XH CIL_0000XH_000E CGP 4:111919392-111988223

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000004109 CR846080.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000039257 si:ch73-137d22.1 si:ch73-137d22.1 protein_coding Danio_rerio
ENSDARG00000056798 zgc:123297 zgc:123297 protein_coding Danio_rerio
ENSDARG00000079170 zgc:162154 zgc:162154 protein_coding Danio_rerio

Loading