C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: collagen, type XXII, alpha 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000079022 Col22a1 10090 - 15:71795795-72034227 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000159410 Col22a1-003 71922900-71954399 protein_coding
  ENSMUST00000159993 Col22a1-001 71795795-72034227 protein_coding
  ENSMUST00000160513 Col22a1-004 71868881-71897616 protein_coding
  ENSMUST00000162081 Col22a1-002 71904728-71954374 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000159410ENSMUST00000159993ENSMUST00000160513ENSMUST00000162081
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000159410 N/A N/A N/A N/A N/A N/A N/A N/A 0.116±0.09 N/A N/A N/A N/A 62.674±50.06
ENSMUST00000159993 0.125±0.16 0.248±0.07 0.034±0.00 0.548±0.43 0.057±0.03 0.083±0.01 0.054±0.01 0.009±0.00 0.010±0.01 0.045±0.01 2.584±0.75 0.194±0.07 0.088±0.06 N/A
ENSMUST00000160513 N/A N/A N/A N/A 0.134±0.00 0.275±0.01 N/A 0.052±0.00 N/A N/A N/A 0.646±0.00 0.330±0.16 48.097±29.64
ENSMUST00000162081 N/A N/A N/A N/A N/A N/A N/A N/A 0.006±0.00 N/A N/A 0.191±0.00 0.070±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004PS CIL_0004PS_0002 CGP 15:71445678-72034227
CIL_0004PZ CIL_0004PZ_0002 CGP 15:71795795-72546279

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000078899 prp persistent plexus protein_coding Danio_rerio
ENSG00000169436 COL22A1 collagen, type XXII, alpha 1 protein_coding Homo_sapiens

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